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@umccr

UMCCR

University of Melbourne Centre for Cancer Research

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  1. htsget-rs htsget-rs Public

    A server implementation of the htsget protocol for bioinformatics in Rust

    Rust 56 9

  2. infrastructure infrastructure Public

    Infrastructure as Code at UMCCR

    Python 11 8

  3. cwl-ica cwl-ica Public

    A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide

    Common Workflow Language 13 2

  4. orcabus orcabus Public

    OrcaBus is expanding to https://github.com/orcabus

    Python 5

  5. RNAsum RNAsum Public

    Pipeline for generating RNAseq-based cancer patient reports

    R 15 8

Repositories

Showing 10 of 135 repositories
  • orcavault Public

    OrcaVault - Comprehensive Data Warehouse for Pipeline Automation

    umccr/orcavault's past year of commit activity
    Shell 0 0 0 1 Updated Sep 11, 2026
  • steps-s3-copy Public

    A Steps orchestration for copying large volumes of S3 objects

    umccr/steps-s3-copy's past year of commit activity
    TypeScript 1 MIT 0 14 0 Updated Sep 10, 2026
  • orcaglue Public

    OrcaGlue - Frontline ETL for Pipeline Automation Data Warehouse

    umccr/orcaglue's past year of commit activity
    Python 0 0 0 0 Updated Sep 8, 2026
  • orcahouse Public

    🐳 UMCCR Pipeline & Workflow Data Warehouse

    umccr/orcahouse's past year of commit activity
    HCL 0 0 0 0 Updated Sep 8, 2026
  • guardians-doc Public

    Published documentation for UMCCR for the GUARDIANS project

    umccr/guardians-doc's past year of commit activity
    MDX 0 0 0 1 Updated Sep 7, 2026
  • wrapica Public

    A suite of secondary / tertiary functions for running ICA API calls

    umccr/wrapica's past year of commit activity
    Python 2 GPL-3.0 0 7 0 Updated Sep 4, 2026
  • oncovault Public

    OncoVault - Comprehensive Data Warehouse for Pipeline Result

    umccr/oncovault's past year of commit activity
    Makefile 0 0 0 0 Updated Sep 3, 2026
  • RNAsum Public

    Pipeline for generating RNAseq-based cancer patient reports

    umccr/RNAsum's past year of commit activity
    R 15 8 16 0 Updated Aug 24, 2026
  • bolt Public

    UMCCR post-processing WGS logic and CLI tool

    umccr/bolt's past year of commit activity
    Python 0 GPL-3.0 1 0 2 Updated Aug 20, 2026
  • gpgr Public

    📚 Genomics Platform Group Reporter

    umccr/gpgr's past year of commit activity
    R 10 2 4 3 Updated Aug 20, 2026
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