snp-array

Integrated copy number variation detection toolset

Genotype imputation pipelines for the UK Biobank Research Analysis Platform

Automated Tool for Global Screening Array analysis

Candidate flanking-SNP marker panels for PGT-M linkage before an experiment. After one, parent of origin from SNP arrays, and a parental genotype reconstructed from haploid cells. Research use only.

imputation workflow for array data using shapeit2 and impute2

LmTag is a model based method to find tagSNP in SNP array desgin that maximizes imputation coverage and functional score of tag SNPs

Platform for your SNP array data

An R package to integrate and analyze CNV calling results from multiple methods in a uniformed and standardized manner

Reproducible bash-in-Jupyter tutorial for Illumina SNP microarray genotyping pipeline: IDAT → GTC → VCF → PLINK. Foundation for population-scale precision medicine and polygenic risk scoring workflows.

Running codes and data analysis scripts for SNP array comparison paper