Common Workflow Language reference implementation
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Sep 8, 2026 - Python
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sciworkflows
Here are 9 public repositories matching this topic...
RNA-seq workflow using STAR and DESeq2
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Dec 18, 2025 - Python
This Snakemake pipeline implements the GATK best-practices workflow
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Jun 8, 2023 - Python
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
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Sep 7, 2026 - Python
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
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Aug 17, 2026 - Python
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
workflow bioinformatics gwas snakemake pipeline genomics ngs conda bioinformatics-pipeline structural-variation gwas-pipeline bioinformatics-tool gwas-tools kmers sciworkflows association-mapping
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Apr 18, 2024 - Python
Snakemake workflow to construct species phylogenies using BUSCOs
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Jul 30, 2026 - Python
Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake
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Aug 5, 2026 - Python
A Snakemake workflow for variant calling with DeepVariant, and optionally joint variant calling using GLnexus.
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Jun 30, 2021 - Python
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