omop

OMOP standardization pipeline for ICU databases

eds-scikit is a Python library providing tools to process and analyse OMOP data

Extracting Patients' information from clinical notes and export them to an OMOP CDM database.

Streamlined Data Mapping to OMOP

An ETL pipeline to transform your EMP data to OMOP.

FHIR to OMOP using PySpark on AWS Glue

Get an OMOP CDM database running quickly.

The OMOP Common Data Model(v6) implemented in Django (v3)

Load OHDSI Vocab from Athena into PostgreSQL DB

Streamlined Data Transformation to OMOP

A Python data class representation of the Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM)

Federated summary algorithm for a RDB following the OMOP CDM and using Vantage6

The work of OMOP on the dbt for demo in OHDSI Symposium 2022

Update Usagi mappings with kotobuki

core of pymedext source

Turn one plain-English sentence into a validated, audit-ready clinical algorithm — DAG, OMOP terminology anchoring, a certified bundle, and a SQL cost preflight. Open governance tooling for clinical scenarios.

Translational Computational Phenotyping

OMOP Platform for Analytics & Lineage — Data quality, cohort building, vocabulary mapping and concept exploration for OMOP CDM databases

End-to-end healthcare data platform on AWS — OMOP CDM batch + streaming ETL, Redshift OLAP + ML, FastAPI, Streamlit dashboard. BCIT capstone (COMP8900)

Python package to query and model ATLAS-like cohorts (Concept Sets, Criteria, Entry/Exit events) using a synthetic Synthea OMOP CDM database in DuckDB.