Automated omics-scale protein modeling and simulation setup.
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Sep 20, 2021 - Python
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modeller
Here are 14 public repositories matching this topic...
An automated pipeline for homology-modeling based on modeller
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Nov 25, 2020 - Python
AlphaMod's official repository for protein folding
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Jul 1, 2026 - Python
Generating PDB Structure Models via Modeller-Python
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Nov 22, 2020 - Python
Homology modeling of alpha-amylase using bioinformatics tools to predict 3D protein structure and analyze structural features.
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Apr 19, 2026 - Python
A Python-based comparative modeling workflow using MODELLER to build homology models from a target FASTA and template PDB, with comparison against a Swiss-Model structure.
pdb protein-structure biopython pymol structural-bioinformatics homology-modeling modeller comparative-modeling
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Dec 30, 2025 - Python
Homology Modelling of the human cryptochrome-1 using mouse cryptochrome-1
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Jun 12, 2023 - Python
Computer-Aided Drug Design (IIIT Delhi): DRT3 anti-phage target pitch (PDB 9Z6Y) and MODELLER homology-modelling pipelines.
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Oct 13, 2026 - Python
ProSutra is an automated pipeline for protein structure prediction, validation, and report generation with CLI, Streamlit, and Electron interfaces.
bioinformatics protein-structure computational-biology bioinformatics-pipeline bioinformatics-analysis dssp modeller protein-structure-prediction bioinformatics-tool freesasa computational-biology-datasets protein-validation molprobity robetta qmean voromqa
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Mar 19, 2026 - Python
A script to generate a tripeptide database. At present, the amino acids of tripeptides produced are not complete
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May 18, 2021 - Python
A Python script that compares predicted protein structures (AlphaFold2, MODELLER, RoseTTAFold) against an experimental reference for a single target, reporting quality/fit metrics.
python pdb protein-structure model-evaluation structural-bioinformatics modeller alphafold2 rosettafold
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Dec 30, 2025 - Python
Computational structural characterisation of PfMSP3.1 SPAM, including modelling, MD, docking, AlphaFold and experimental NMR-restraint reassessment.
bioinformatics reproducible-research protein-structure molecular-dynamics computational-biology protein protein-sequences malaria gromacs coiled-coil structural-bioinformatics sequence-analysis modeller protein-folding protein-docking plasmodium-falciparum alphafold alphafold3 pfmsp3 nmr-restraints
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Sep 16, 2026 - Python
Assess models previously generated with modeller with the DOPE method
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Oct 26, 2023 - Python
基于modeller官网脚本进行开发的序列比对脚本
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Jun 12, 2021 - Python
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