A biclustering library with datasets, evaluation measures and a benchmarking framework
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Jun 20, 2022 - Python
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geneexpression
Here are 9 public repositories matching this topic...
An interactive Streamlit app for processing and visualizing GEO data from NCBI's Gene Expression Omnibus.
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Jun 12, 2023 - Python
DPre is a bioinformatic tool that enables the user to explore cell type conversion/ differentiation experiments. DPre may take the expression or the differentially regulated genes of the samples to rate transcriptional similarity with a reference dataset, the targets.
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Oct 20, 2019 - Python
A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.
python datascience microarray datasets preprocessing ncbi ncbi-geo ncbi-database geneexpression preprocess-dataset microarray-data-analysis
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Jul 28, 2020 - Python
HRD200: Machine learning model to predict patient HRD status using gene expression data
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Sep 6, 2024 - Python
This repository contains an example implementation of DESeq2 in Python.
python bioinformatics rnaseq deseq2 transcriptomics bioinformatics-analysis bioinformatics-scripts geneexpression deseq2-analysis ranseqpipeline
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Oct 25, 2024 - Python
Interactive Streamlit dashboard for differential gene expression. It runs Student’s t-tests and log2 fold change on a transcriptomic matrix and draws dynamic Plotly volcano plots.
python bioinformatics plotly scipy transcriptomics differential-expression geneexpression volcano-plot streamlit
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Oct 17, 2026 - Python
Script to identify splice events between differentially expressed transcripts
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Jun 17, 2026 - Python
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