circrna

circular RNA analysis toolset

A method for circular DNA detection based on probabilistic mapping of ultrashort reads

A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147)

circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.

A Python3-base pipeline for translated circular RNA(circRNA) identification

An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts

🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data

A sensitive and fast tool for circular RNA detection from RNA-Seq data

CircRNA testing and ploting R package

R language based circRNA visualization toolbox

This repository contains the results and comparison visualization of circRNA candidates detected by circRNA prediction softwares.

A pipeline to map junction reads for circular intronic RNAs (ciRNAs)

Immune checkpoint blocakde-related circRNA signature (ICBcircSig) score model based on progression-free survival-related circRNAs to predict immunotherapy efficacy.

pycircdb: integrated circRNA database annotation for computational workflows

An assembler for circular RNAs

circRNA ReAlign Inner Splice and Expression detection

Circrnas in Host And viRuses anaLysis pIpEline for Detection Annotation Quantification of circRNAs

Tool for indexing and querying back-splice junctions of circular RNAs (circRNAs) in RNA-Seq datasets

BOVINE-circQTL is a code repository for the pipeline of circQTL identification and downstream analysis in bovine muscle tissue.