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  1. eyespot_simulator eyespot_simulator Public

    An interactive in silico CRISPR clone engine and reaction-diffusion simulator modeling butterfly wing eyespot development (Bicyclus anynana).

    Python

  2. hcrprobedesigner hcrprobedesigner Public

    A user friendly interface to design HCR v3.0 probes for fluorescent in-situ hybridization

    HTML

  3. NEO-CRISPR NEO-CRISPR Public

    NEO-CRISPR is a standalone desktop application that runs entirely on your own computer.

    Python

  4. RAMFISH RAMFISH Public

    This repository contains files including codes, apps, STLs, CAD designs, sketches, and excel sheets from the paper "A spatial mRNA profiling workflow using Rapid Amplified Multiplexed-FISH (RAMFISH…

    C++

  5. HCR_Probe_Finder HCR_Probe_Finder Public

    Searchable database of HCR probe sets designed in the lab, plus computationally designed probe pairs (not yet experimentally tested) for every gene in Bicyclus anynana and zebrafish. Choose isoform…

    HTML

  6. RAMFISH_Studio RAMFISH_Studio Public

    RAMFISH Studio brings the five tools of the RAMFISH Software Suite together in one app that opens in your web browser. Process any microscopy file, perform quantification, and create publication gr…

    Python