Institute of Medical Systems Biology, Ulm University
- 9 followers
- Ulm, Germany
- http://sysbio.uni-ulm.de/
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VennMaster
VennMaster PublicVennMaster: A tool for drawing area proportional Venn diagrams
Repositories
- geneticumap Public
geneticUMAP optimizes UMAP-based clustering pipeline parameters for single-cell RNA-seq data, such as resolution, the number of principal components, and the number of neighbors. Associated Paper (Unpublished): geneticUMAP: Objective and Robust Parameter Optimization for scRNA-Seq Data Visualization
- geneticumap_evaluation Public
This repository contains evaluation code accompanying our currently unpublished manuscript, "GeneticUMAP: Objective and Robust Parameter Optimization for scRNA-Seq Data Visualization". This repository contains R scripts for post-hoc evaluation and figure generation; it does not include the input datasets or optimization result archives.
- onith Public
ONITH: An Ontology-based Non-clinical Integration and Term Harmonization Pipeline for Cross-Study Computational Modeling in 3R
- pathXcite Public
Standalone software for literature-based over-representation analysis and hypothesis generation.
- BenchmarkBooleanGRN Public
Dataset and supplementary material for "Benchmark Boolean Models for Gene Regulatory Networks"
- directedThresholdClassifiers Public
- Prevent-take-up Public
- signallingEntropy Public
- QuantumAttractorSearch Public
Jupyter notebook for running an attractor search in Boolean Networks using quantum computers
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