I think that now that the data loaders return logCPM normalised expression in adata.X the true_features and true_features_logCPM baseline methods for the dimensionality reduction task are now identical and we should only use one of them (or modify true_features to use raw counts?).
mainbranch of openproblems.I think that now that the data loaders return logCPM normalised expression in
adata.Xthetrue_featuresandtrue_features_logCPMbaseline methods for the dimensionality reduction task are now identical and we should only use one of them (or modifytrue_featuresto use raw counts?).