I build tools where bioinformatics, data engineering, and AI-assisted development meet—usually in Python, often open source, and always with an eye on making difficult technical work easier to understand.
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JAMMA is a modern Python and C reimplementation of GEMMA for large-scale GWAS. It keeps GEMMA's familiar CLI and file formats while adding memory-safety checks and delivering up to 30× faster LOCO analysis. |
pyLocusZoom turns GWAS results into publication-ready and interactive figures: regional association plots, gene tracks, fine-mapping, PheWAS, LD heatmaps, forest plots, and more. |
Tools that give coding agents better context, stronger workflows, and real language intelligence.
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Pyrefly LSP plugin Fast Python type checking and language intelligence packaged for Claude Code. |
Terraform LSP plugin Terraform language-server integration packaged as a Claude Code plugin. |
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Marksman LSP plugin Markdown navigation and language intelligence for Claude Code. |
pstack for Claude Code Rigorous agent workflows ported to Claude Code primitives for reviewing, debugging, and shipping software. |
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Memory MCP A persistent second brain for AI assistants, combining a zero-latency hot cache with semantic recall, knowledge-graph links, and pattern mining. |
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Black Box Unlock investigates a codebase like a crime scene. It ranks hotspots, hidden coupling, ownership risk, CI failures, and defect history so reviews and refactors start where the evidence points. |
Everything Must Go is a WebGL art piece in which a spinning black hole consumes a procedurally generated cosmos over twelve minutes—then the universe is born again. |
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JustVugg/colibri ARM kernel performance, profiling accuracy, portability, and memory-management fixes for a tiny C inference engine. View contributions → |
tirth8205/code-review-graph Contributions spanning R and notebook parsing, plus module-scope call-graph correctness, for a persistent code knowledge graph. View contributions → |
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satchellhong/qqman Modernised the Python package for current Python 3.10+ environments. View contribution → |
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Meanwhile, at the Commit Café…
Repositories become cats, recent commits become yarn, open pull requests wait at the door, and the contribution streak fills the food bowl.
