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Restricting by a union, inserting from a union, or nesting a union with secondary attributes raises TypeError #1658

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Description

@dimitri-yatsenko

What happens

A union (A + B) works when it is fetched, counted, joined to another table, or restricted itself. Three other uses raise an error instead of running the query:

  • restricting a table by a union, with & or -
  • inserting the rows of a union into a table with Table.insert(union)
  • a union whose left operand is a union, when the operands have secondary attributes, for example (Parent + ParentInfo) + ParentNote

Each one raises:

TypeError: Union.make_sql() takes 1 positional argument but 2 were given

Reproduction

On master (3c912c4). The results are the same on MySQL 8.0 and PostgreSQL 15.

import datajoint as dj

schema = dj.Schema("union_repro")

@schema
class Parent(dj.Manual):
    definition = """
    parent_id : int32
    ---
    label : varchar(8)
    """

@schema
class ParentInfo(dj.Manual):
    definition = """
    -> Parent
    ---
    info : varchar(8)
    """

@schema
class ParentNote(dj.Manual):
    definition = """
    -> Parent
    ---
    note : varchar(8)
    """

@schema
class Child(dj.Manual):
    definition = """
    -> Parent
    child_id : int32
    ---
    color : varchar(8)
    """

@schema
class Target(dj.Manual):
    definition = """
    parent_id : int32
    """

Parent.insert([
    {"parent_id": 1, "label": "a"},
    {"parent_id": 2, "label": "b"},
    {"parent_id": 3, "label": "a"},
    {"parent_id": 4, "label": "b"},
])
ParentInfo.insert([{"parent_id": 2, "info": "x"}])
ParentNote.insert([{"parent_id": 3, "note": "n"}])
Child.insert([
    {"parent_id": 1, "child_id": 1, "color": "red"},
    {"parent_id": 2, "child_id": 1, "color": "blue"},
    {"parent_id": 4, "child_id": 1, "color": "red"},
])

keys = (Parent & {"label": "a"}).proj() + ParentInfo.proj()
keys.keys()   # parents 1, 2, 3 -- the union on its own is correct
Query Expected Actual (MySQL and PostgreSQL)
Child & keys children (1, 1), (2, 1) TypeError (condition.py:455)
Child & (Parent.proj() + ParentInfo.proj()) all 3 children TypeError (condition.py:455)
Child & (ParentInfo + ParentNote) child (2, 1) TypeError (condition.py:455)
Parent - keys parent 4 TypeError (condition.py:455)
Target.insert(keys) Target holds 1, 2, 3 TypeError (table.py:910)
(Parent + ParentInfo) + ParentNote 4 rows of parent_id, label, info, note, with NULL where a value is missing TypeError (condition.py:455)

These already work: a nested union of primary keys only, such as (ParentInfo.proj() + ParentNote.proj()) + Parent.proj(); the same nested union with the inner union on the right, ParentNote + (Parent + ParentInfo); a join with a union; and a restriction applied to a union.

Cause

Union.make_sql(self) (src/datajoint/expression.py:1432) takes no fields argument. QueryExpression.make_sql (expression.py:147) and Aggregation.make_sql (expression.py:1355) both take fields=None. Three callers pass fields to a union:

  • Restriction. make_condition (src/datajoint/condition.py:455) builds (attrs) in (subquery) from condition.make_sql(common_attributes). Two lines earlier (condition.py:445-446) it wraps an Aggregation in a subquery, but it does not wrap a Union.
  • Insert from a query. Table.insert (src/datajoint/table.py:910) builds INSERT INTO ... (fields) {rows.make_sql(fields)}.
  • Nested union with secondary attributes. In this branch Union.make_sql computes arg2 - arg1 (expression.py:1445). When arg1 is a union, that restriction goes through make_condition and fails as in the first case. The primary-key-only branch checks isinstance(arg1, Union) and calls make_sql() without arguments (expression.py:1439-1440). That check came from the fix for Cannot form the union of more than two tables #926. The other callers were never changed.

A join, a projection, or a restriction applied to a union first puts the union in a subquery (expression.py:268, 408-414, 613), and that path calls make_sql() with no arguments. This is why those operations work.

Expected

All six queries in the table should return the expected rows. Union.make_sql should take fields=None like the other make_sql methods. When fields is given, it should select those columns from the union, used as a subquery: SELECT <fields> FROM (<union>) AS .... Accepting the argument and ignoring it is not enough:

  • In a restriction, the subquery must return only the shared attributes. Without that, Child & (ParentInfo + ParentNote) would put all of the union's columns inside IN (...).
  • In an insert, the selected columns must match the insert's column list.

Another option is for both callers to put a union in a subquery with make_subquery(), as condition.py already does for an aggregation. Changing Union.make_sql fixes all three cases in one place.

#1657 (open) changes the same code for dj.Top: the subquery check at condition.py:445 and Union.make_sql. With #1657, a union limited by dj.Top would be put in a subquery when used in a restriction. A union without dj.Top would still raise this error in every case above. The two changes touch the same lines, so this fix should build on #1657 or be merged together with it.

Activity

  1. added this to the v2.3.7 milestone on Nov 6, 2026
  2. added
    bugIndicates an unexpected problem or unintended behavior
    on Nov 6, 2026
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