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@VEuPathDB

VEuPathDB Bioinformatics Resource Center

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  1. humann-nextflow humann-nextflow Public

    run kneaddata+humann for a list of samples using nextflow

    Python 5 1

  2. ApiCommonData ApiCommonData Public

    Perl 4 3

  3. EbrcWebsiteCommon EbrcWebsiteCommon Public

    Perl 3 3

  4. ApiCommonWebsite ApiCommonWebsite Public

    Perl 3 1

  5. web-monorepo web-monorepo Public

    A monorepo that contains all frontend code for VEuPathDB websites

    TypeScript 3

  6. gente gente Public

    Forked from sciurus/gente

    A web application for self-service LDAP password changes

    Perl 2

Repositories

Showing 10 of 340 repositories
  • pathfinder-app Public
    VEuPathDB/pathfinder-app's past year of commit activity
    Python 0 Apache-2.0 0 2 0 Updated Sep 18, 2026
  • plasmoFAST Public Forked from ko-katie/plasmoFAST

    k-mer based tool for detecting Plasmodium falciparum lab strains from sequencing data

    VEuPathDB/plasmoFAST's past year of commit activity
    Python 0 1 1 1 Updated Sep 18, 2026
  • ngs-samples-nextflow Public

    Fetch ngs samples from SRA if needed and/or prepare samplesheet for further processing

    VEuPathDB/ngs-samples-nextflow's past year of commit activity
    Nextflow 0 Apache-2.0 0 0 0 Updated Sep 18, 2026
  • dataset-curator Public

    This repository contains tools and standard operating procedures (SOPs) for processing new datasets for VEuPathDB resources.

    VEuPathDB/dataset-curator's past year of commit activity
    JavaScript 0 0 0 3 Updated Sep 18, 2026
  • ai-assistant-platform Public
    VEuPathDB/ai-assistant-platform's past year of commit activity
    Python 0 0 0 0 Updated Sep 18, 2026
  • jenkins-website-job-generator Public

    Generate Jenkins job configurations for EuPathDB core sites using the job-dsl plugin

    VEuPathDB/jenkins-website-job-generator's past year of commit activity
    Groovy 1 Apache-2.0 0 1 0 Updated Sep 18, 2026
  • ApiCommonWorkflow Public
    VEuPathDB/ApiCommonWorkflow's past year of commit activity
    Perl 1 Apache-2.0 2 1 2 Updated Sep 18, 2026
  • orthoFinder-nextflow Public

    orthoFinder Nextflow workflow

    VEuPathDB/orthoFinder-nextflow's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 18, 2026
  • web-monorepo Public

    A monorepo that contains all frontend code for VEuPathDB websites

    VEuPathDB/web-monorepo's past year of commit activity
    TypeScript 3 Apache-2.0 0 285 40 Updated Sep 18, 2026
  • vdi-service Public

    VEuPathDB Dataset Installer

    VEuPathDB/vdi-service's past year of commit activity
    Kotlin 0 Apache-2.0 0 39 1 Updated Sep 18, 2026
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