Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Search
/
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
StochSS
/
SpatialPy
Public
Notifications
You must be signed in to change notification settings
Fork
4
Star
21
Code
Issues
29
Pull requests
8
Actions
Projects
Security and quality
0
Insights
Additional navigation options
Code
Issues
Pull requests
Actions
Projects
Security and quality
Insights
Updates to the Model and Reaction modules
- #271
#271
Merged
seanebum
merged 15 commits into
develop
StochSS/SpatialPy:develop
from
update-model-reaction
StochSS/SpatialPy:update-model-reaction
Copy head branch name to clipboard
Jun 7, 2022
Conversation
Commits
15
(15)
Checks
Files changed
Merged
Updates to the Model and Reaction modules
#271
seanebum
merged 15 commits into
develop
StochSS/SpatialPy:develop
from
update-model-reaction
StochSS/SpatialPy:update-model-reaction
Copy head branch name to clipboard
Commits
Commits on May 25, 2022
Re-organized the model class functions.
BryanRumsey
committed
9a14edb
View commit details
Copy full SHA for 9a14edb
Browse repository at this point
Moved imports to the top of the model module.
BryanRumsey
committed
9afb31c
View commit details
Copy full SHA for 9afb31c
Browse repository at this point
Updated Model.update_namespace().
BryanRumsey
committed
efc1e21
View commit details
Copy full SHA for efc1e21
Browse repository at this point
Commits on Jun 1, 2022
Refactored and re-organized the component functions. Added missing component functions. Added a __getitem__ function. Added resolve functions for parameters and reactions.
BryanRumsey
committed
56fa78d
View commit details
Copy full SHA for 56fa78d
Browse repository at this point
Fixed issue in solver caused by the change in the data functions data structure.
BryanRumsey
committed
b47ee66
View commit details
Copy full SHA for b47ee66
Browse repository at this point
Commits on Jun 2, 2022
Refactored the reaction class to be more consistent with GillesPy2.Reaction.
BryanRumsey
committed
5c51d77
View commit details
Copy full SHA for 5c51d77
Browse repository at this point
Refactored the unit test to cover the changes in reaction.py.
BryanRumsey
committed
bcb8c18
View commit details
Copy full SHA for bcb8c18
Browse repository at this point
Commits on Jun 6, 2022
Resolved merge conflicts.
BryanRumsey
committed
27e6a4f
View commit details
Copy full SHA for 27e6a4f
Browse repository at this point
Merge branch 'update-model-reaction' of https://github.com/StochSS/SpatialPy into update-model-module
BryanRumsey
committed
d4982ff
View commit details
Copy full SHA for d4982ff
Browse repository at this point
Merge branch 'update-model-reaction' of https://github.com/StochSS/SpatialPy into update-reaction-module
BryanRumsey
committed
8d592de
View commit details
Copy full SHA for 8d592de
Browse repository at this point
Merge branch 'develop' of https://github.com/StochSS/SpatialPy into update-model-reaction
BryanRumsey
committed
3ade2f7
View commit details
Copy full SHA for 3ade2f7
Browse repository at this point
Merge pull request #272 from StochSS/update-model-module
Show description for e032174
briandrawert
authored
e032174
View commit details
Copy full SHA for e032174
Browse repository at this point
Merge pull request #273 from StochSS/update-reaction-module
Show description for b9121f2
briandrawert
authored
b9121f2
View commit details
Copy full SHA for b9121f2
Browse repository at this point
Added missing functions to reaction bug and fixed issue with resolving reactions.
BryanRumsey
committed
8425322
View commit details
Copy full SHA for 8425322
Browse repository at this point
Added check to ensure that the marate is a str before checking if its a digit.
BryanRumsey
committed
c3942d5
View commit details
Copy full SHA for c3942d5
Browse repository at this point
You can’t perform that action at this time.