PILOT-3018: remove the related lineage related code

[colorzzr]

Summary

since the atlas has been deprecate and the api in bff-cli was removed, the related code in cli will be removed as well

JIRA Issues

PILOT-3018

Type of Change

Please delete options that are not relevant.

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Breaking change (fix or feature that would cause existing functionality to not work as expected)
• This change requires a documentation update
• Refactor or reformatting

Testing

Are there any new or updated tests to validate the changes?

• Yes
• No

Test Directions

(Additional instructions for how to run tests or validate functionality if not covered by unit tests)

[github-actions]

Coverage Report

File	Stmts	Miss	Cover	Missing
__init__.py	0	0	100%
pilotcli.py	0	29	0%	5–6, 8–12, 15–19, 21–26, 29–37, 40–41
commands
__init__.py	0	0	100%
container_registry.py	0	47	0%	5, 7–10, 13–14, 16, 19–24, 27–33, 36–44, 47–53, 56–65
dataset.py	0	48	44%	19, 36–38, 41–48, 50–60, 78–80, 83–91, 93–103, 123, 127
entry_point.py	0	102	0%	5, 7, 9–10, 12–25, 28–39, 41–42, 45–51, 54–56, 59–63, 66–70, 73–77, 80–83, 86–88, 91–94, 97–114, 117, 119–121, 123–129, 131, 133–135, 137
file.py	0	61	69%	36, 133, 137, 155–156, 198, 280–287, 289, 291, 305–311, 313, 342, 344, 347, 383–389, 392–393, 395–396, 398–410, 412–414, 416, 419–421, 423–425
hpc.py	0	123	0%	5, 7–17, 20–21, 23, 26–29, 36–40, 42–45, 47–49, 51, 53–61, 64–72, 75–84, 87–100, 103–117, 120–132, 134–137, 140–153, 155–157
kg_resource.py	0	13	0%	5, 7–9, 12–13, 15, 18–23
project.py	0	39	0%	5–6, 8–11, 14–15, 17, 20–23, 31, 39, 48–52, 55–62, 64–74
use_config.py	0	13	0%	5, 7–9, 12–13, 15, 18–20, 27–29
user.py	0	6	85%	23, 40, 48, 56, 72–73
configs
__init__.py	0	0	100%
app_config.py	0	0	100%
user_config.py	0	19	83%	44, 53, 97, 108, 115, 119, 123, 127, 131, 135, 139, 143, 147, 151, 155, 159, 163, 167, 171
models
__init__.py	0	0	100%
convert_type.py	0	8	0%	5, 7, 10–15
enums.py	0	0	100%
service_meta_class.py	0	2	80%	9, 16
singleton.py	0	0	100%
upload_form.py	0	26	61%	10, 25, 29, 33, 37, 41, 45, 49, 53, 57, 61, 65, 69, 73, 77, 81, 85, 89, 93, 97, 122, 134–138
resources
custom_error.py	0	0	100%
custom_help.py	0	0	100%
services
__init__.py	0	0	100%
services/crypto
__init__.py	0	0	100%
crypto.py	0	19	40%	35, 43–47, 49, 59–61, 69–75, 77, 79
services/dataset_manager
dataset_detail.py	0	23	70%	42, 44, 61, 68–73, 75–77, 79–88, 90
dataset_download.py	0	19	83%	56, 72–73, 84, 96, 98–99, 101–102, 104, 106–108, 116–119, 153, 165
dataset_list.py	0	6	83%	37, 43–44, 46–48
model.py	0	0	100%
services/file_manager
__init__.py	0	0	100%
file_list.py	0	19	71%	29, 48, 50, 57–58, 63–65, 73–76, 78, 84–89
file_manifests.py	0	95	25%	19–24, 39–43, 47–48, 51–59, 61, 65–68, 71–75, 77, 81–82, 85–87, 91–92, 95–102, 104, 107, 109–110, 112–113, 115–118, 123–129, 134–139, 142–148, 150–152, 155–161, 163–165, 167–170
file_tag.py	0	39	31%	23, 27–31, 33, 36–48, 50–52, 54–55, 59–61, 64–68, 70–73, 75–76
services/file_manager/file_download
__init__.py	0	0	100%
download_client.py	0	187	17%	29–41, 44–45, 47–53, 56–57, 59–60, 69, 71–72, 76–79, 86, 91–94, 96, 98–106, 108, 110, 114–119, 121, 124–125, 128–130, 132–134, 136–137, 139–141, 145–153, 156–161, 165–174, 182–184, 186–193, 195–199, 204–214, 216–217, 220–221, 226–227, 231–236, 240–241, 244–246, 248–259, 263–266, 269–273, 275–277, 279–281, 283–284, 286, 290–292, 294–307, 309
model.py	0	1	87%	15
services/file_manager/file_upload
__init__.py	0	0	100%
exception.py	0	1	75%	10
file_upload.py	0	30	81%	33–40, 74, 104, 135–136, 140, 145, 177, 185–187, 191, 208, 210, 214, 225–226, 228–230, 308, 311, 315
models.py	0	5	91%	23, 41, 147–149
upload_client.py	0	75	57%	100–103, 165–167, 181–187, 189–193, 195–207, 209, 253, 256, 260, 262–265, 269–274, 276, 280, 282, 284, 286, 304, 329–330, 335, 339–342, 346, 362, 364–366, 373, 378–379, 381, 383–384, 386–389, 391
upload_validator.py	0	24	52%	26–28, 31–36, 39–48, 51–52, 57, 59, 61
services/hpc_manager
hpc_auth.py	0	0	100%
hpc_cluster.py	0	68	32%	34–37, 39–40, 42, 46–58, 60–64, 66–67, 72–74, 76–77, 81–93, 95–99, 101–102, 106–118, 120–121, 123
services/kg_manager
kg_resource.py	0	11	85%	33–34, 36–37, 65–66, 81–82, 87–89
services/logger_services
__init__.py	0	0	100%
log_functions.py	0	0	100%
services/output_manager
__init__.py	0	0	100%
error_handler.py	0	1	98%	104
help_page.py	0	10	89%	36–37, 46–47, 107–108, 117–118, 130–131
message_handler.py	0	56	66%	23, 45, 50, 65–67, 72, 77, 82, 87, 100, 105, 112, 117, 122, 126, 142, 162, 172, 182, 201, 223–234, 245–250, 252–258, 269, 273–274, 278–279, 281–282, 286, 290, 294
response_handler.py	0	53	0%	5–6, 9–12, 14–15, 17–21, 23–24, 26–34, 36–39, 42–45, 47–48, 50–56, 58–59, 61–63, 65–68, 71–73
services/project_manager
__init__.py	0	0	100%
project.py	0	6	83%	38, 44–45, 47–49
services/user_authentication
__init__.py	0	0	100%
decorator.py	0	10	75%	29, 32, 51–53, 59–62, 64
token_manager.py	0	15	75%	24, 39–40, 71, 74, 81–82, 88–89, 91–94, 96, 101
user_login_logout.py	0	42	66%	29–30, 40, 123, 127–133, 135–137, 141–142, 146–153, 155–157, 161–162, 169–174, 176–178, 182–185
user_set_config.py	0	9	47%	15–18, 22–24, 26–27
utils
__init__.py	0	0	100%
aggregated.py	0	31	66%	22, 46, 71–73, 75–76, 83–84, 86, 90–93, 95–96, 115–117, 119, 124–131, 133–135
TOTAL	3145	1391	55%