Pilot 3209: fixup the manifest attaching when resumable upload

[colorzzr]

Summary

there is a bug when use try to resume a upload with the manifest. The manifest will be lost during the resumable upload. To fix this, add the information of manifest into output json. and add manifest attaching logic when resume a upload

JIRA Issues

Pilot 3209

Type of Change

Please delete options that are not relevant.

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Breaking change (fix or feature that would cause existing functionality to not work as expected)
• This change requires a documentation update
• Refactor or reformatting

Testing

Are there any new or updated tests to validate the changes?

• Yes
• No

Test Directions

add a test to check if manifest function is called

[github-actions]

Coverage Report

File	Stmts	Miss	Cover	Missing
__init__.py	0	0	100%
pilotcli.py	0	29	0%	5–6, 8–12, 15–19, 21–26, 29–37, 40–41
commands
__init__.py	0	0	100%
container_registry.py	0	47	0%	5, 7–10, 13–14, 16, 19–24, 27–33, 36–44, 47–53, 56–65
dataset.py	0	48	44%	19, 36–38, 41–48, 50–60, 78–80, 83–91, 93–103, 123, 127
entry_point.py	0	102	0%	5, 7, 9–10, 12–25, 28–39, 41–42, 45–51, 54–56, 59–63, 66–70, 73–77, 80–83, 86–88, 91–94, 97–114, 117, 119–121, 123–129, 131, 133–135, 137
file.py	0	61	69%	36, 133, 137, 155–156, 198, 280–287, 289, 291, 305–311, 313, 342, 344, 347, 383–389, 392–393, 395–396, 398–410, 412–414, 416, 419–421, 423–425
hpc.py	0	123	0%	5, 7–17, 20–21, 23, 26–29, 36–40, 42–45, 47–49, 51, 53–61, 64–72, 75–84, 87–100, 103–117, 120–132, 134–137, 140–153, 155–157
kg_resource.py	0	13	0%	5, 7–9, 12–13, 15, 18–23
project.py	0	39	0%	5–6, 8–11, 14–15, 17, 20–23, 31, 39, 48–52, 55–62, 64–74
use_config.py	0	13	0%	5, 7–9, 12–13, 15, 18–20, 27–29
user.py	0	6	85%	23, 40, 48, 56, 72–73
configs
__init__.py	0	0	100%
app_config.py	0	0	100%
user_config.py	0	17	79%	49, 60, 67, 71, 75, 79, 83, 87, 91, 95, 99, 103, 107, 111, 115, 119, 123
models
__init__.py	0	0	100%
convert_type.py	0	8	0%	5, 7, 10–15
enums.py	0	0	100%
service_meta_class.py	0	2	80%	9, 16
singleton.py	0	0	100%
upload_form.py	0	26	61%	10, 25, 29, 33, 37, 41, 45, 49, 53, 57, 61, 65, 69, 73, 77, 81, 85, 89, 93, 97, 122, 134–138
resources
custom_error.py	0	0	100%
custom_help.py	0	0	100%
services
__init__.py	0	0	100%
services/crypto
__init__.py	0	0	100%
crypto.py	0	19	40%	35, 43–47, 49, 59–61, 69–75, 77, 79
services/dataset_manager
dataset_detail.py	0	23	70%	42, 44, 61, 68–73, 75–77, 79–88, 90
dataset_download.py	0	19	83%	56, 72–73, 84, 96, 98–99, 101–102, 104, 106–108, 116–119, 153, 165
dataset_list.py	0	6	83%	37, 43–44, 46–48
model.py	0	0	100%
services/file_manager
__init__.py	0	0	100%
file_list.py	0	19	71%	29, 48, 50, 57–58, 63–65, 73–76, 78, 84–89
file_manifests.py	0	95	25%	19–24, 39–43, 47–48, 51–59, 61, 65–68, 71–75, 77, 81–82, 85–87, 91–92, 95–102, 104, 107, 109–110, 112–113, 115–118, 123–129, 134–139, 142–148, 150–152, 155–161, 163–165, 167–170
file_tag.py	0	39	31%	23, 27–31, 33, 36–48, 50–52, 54–55, 59–61, 64–68, 70–73, 75–76
services/file_manager/file_download
__init__.py	0	0	100%
download_client.py	0	187	17%	29–41, 44–45, 47–53, 56–57, 59–60, 69, 71–72, 76–79, 86, 91–94, 96, 98–106, 108, 110, 114–119, 121, 124–125, 128–130, 132–134, 136–137, 139–141, 145–153, 156–161, 165–174, 182–184, 186–193, 195–199, 204–214, 216–217, 220–221, 226–227, 231–236, 240–241, 244–246, 248–259, 263–266, 269–273, 275–277, 279–281, 283–284, 286, 290–292, 294–307, 309
model.py	0	1	87%	15
services/file_manager/file_upload
__init__.py	0	0	100%
exception.py	0	1	75%	10
file_upload.py	0	30	81%	33–40, 74, 104, 135–136, 140, 145, 177, 185–187, 191, 208, 210, 214, 225–226, 228–230, 308, 311, 315
models.py	0	5	91%	23, 41, 147–149
upload_client.py	0	75	57%	100–103, 165–167, 181–187, 189–193, 195–207, 209, 253, 256, 260, 262–265, 269–274, 276, 280, 282, 284, 286, 304, 329–330, 335, 339–342, 346, 362, 364–366, 373, 378–379, 381, 383–384, 386–389, 391
upload_validator.py	0	24	52%	26–28, 31–36, 39–48, 51–52, 57, 59, 61
services/hpc_manager
hpc_auth.py	0	0	100%
hpc_cluster.py	0	68	32%	34–37, 39–40, 42, 46–58, 60–64, 66–67, 72–74, 76–77, 81–93, 95–99, 101–102, 106–118, 120–121, 123
services/kg_manager
kg_resource.py	0	11	85%	33–34, 36–37, 65–66, 81–82, 87–89
services/logger_services
__init__.py	0	0	100%
log_functions.py	0	0	100%
services/output_manager
__init__.py	0	0	100%
error_handler.py	0	1	98%	104
help_page.py	0	10	89%	36–37, 46–47, 107–108, 117–118, 130–131
message_handler.py	0	56	66%	23, 45, 50, 65–67, 72, 77, 82, 87, 100, 105, 112, 117, 122, 126, 142, 162, 172, 182, 201, 223–234, 245–250, 252–258, 269, 273–274, 278–279, 281–282, 286, 290, 294
response_handler.py	0	53	0%	5–6, 9–12, 14–15, 17–21, 23–24, 26–34, 36–39, 42–45, 47–48, 50–56, 58–59, 61–63, 65–68, 71–73
services/project_manager
__init__.py	0	0	100%
project.py	0	6	83%	38, 44–45, 47–49
services/user_authentication
__init__.py	0	0	100%
decorator.py	0	10	75%	29, 32, 51–53, 59–62, 64
token_manager.py	0	15	75%	24, 39–40, 71, 74, 81–82, 88–89, 91–94, 96, 101
user_login_logout.py	0	42	66%	29–30, 40, 123, 127–133, 135–137, 141–142, 146–153, 155–157, 161–162, 169–174, 176–178, 182–185
user_set_config.py	0	9	47%	15–18, 22–24, 26–27
utils
__init__.py	0	0	100%
aggregated.py	0	31	66%	22, 46, 71–73, 75–76, 83–84, 86, 90–93, 95–96, 115–117, 119, 124–131, 133–135
TOTAL	3113	1389	55%

[erikdvlp]

Approved, just one question for your consideration.