Pilot 4806: CLI differentiates the input path of downloading file between Project Folders and Name Folders

[colorzzr]

Summary

In the same Project/zone, such as Indoc Test Project Green Room, platform allows a Project Folder shares same name with a Name folder, i.e., in Indoc Test Project Green Room, there can be:

• a Project Folder “imaging” - manually created by Project Admin
• a Name folder “imaging” - auto created when Project member joined the Project and registered their username as “imaging”

Detail:

• New path prefix in download commands will allow user to select if downloading from namefolder or project folder.
• See if we can centralize some of this pathing logic to reduce copy pasted code.
• Unit tests to be updated.

JIRA Issues

Pilot 4806

Type of Change

Please delete options that are not relevant.

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Breaking change (fix or feature that would cause existing functionality to not work as expected)
• This change requires a documentation update
• Refactor or reformatting

Testing

Are there any new or updated tests to validate the changes?

• Yes
• No

Test Directions

Add more test cases for download command

[github-actions]

Coverage Report

File	Stmts	Miss	Cover	Missing
__init__.py	0	0	100%
pilotcli.py	0	31	0%	5, 7–8, 10–14, 17–21, 23–28, 31–39, 42–44
commands
__init__.py	0	0	100%
container_registry.py	0	19	59%	16, 22–24, 31–33, 41–44, 50–53, 62–65
dataset.py	0	48	44%	19, 36–38, 41–48, 50–60, 78–80, 83–91, 93–103, 123, 127
entry_point.py	0	10	85%	39, 45, 89–91, 93–97
file.py	0	41	84%	41, 153–155, 159, 164, 167–169, 185–186, 228, 313–320, 322, 324, 338–344, 346, 375, 377, 380, 426, 429, 446–448, 454–455, 549
project.py	0	1	97%	17
user.py	0	6	85%	23, 40, 48, 56, 72–73
configs
__init__.py	0	0	100%
app_config.py	0	0	100%
config.py	0	0	100%
user_config.py	0	17	84%	61, 70, 114, 124, 131, 135, 139, 143, 147, 151, 155, 159, 163, 167, 171, 175, 179
models
__init__.py	0	0	100%
enums.py	0	0	100%
item.py	0	0	100%
service_meta_class.py	0	1	80%	9
singleton.py	0	0	100%
upload_form.py	0	6	25%	30, 42–46
resources
custom_error.py	0	0	100%
custom_help.py	0	0	100%
services
__init__.py	0	0	100%
services/container_registry_manager
container_registry_manager.py	0	108	17%	19–20, 23–26, 29–33, 36–44, 48–60, 62–64, 68–82, 84–86, 90–99, 101–103, 107–110, 125–136, 140–143, 147–162, 164, 166–169
services/crypto
__init__.py	0	0	100%
crypto.py	0	19	40%	35, 43–47, 49, 59–61, 69–75, 77, 79
services/dataset_manager
dataset_detail.py	0	23	70%	42, 44, 61, 68–73, 75–77, 79–88, 90
dataset_download.py	0	19	83%	56, 72–73, 84, 96, 98–99, 101–102, 104, 106–108, 116–119, 153, 165
dataset_list.py	0	8	78%	37, 43–46, 48–50
model.py	0	0	100%
services/file_manager
__init__.py	0	0	100%
file_list.py	0	17	77%	30, 55, 57, 81–83, 91–94, 96, 102–107
file_manifests.py	0	95	25%	19–24, 39–43, 47–48, 51–59, 61, 65–68, 71–75, 77, 81–82, 85–87, 91–92, 95–102, 104, 107, 109–110, 112–113, 115–118, 123–129, 134–139, 142–148, 150–152, 155–161, 163–165, 167–170
file_tag.py	0	39	31%	23, 27–31, 33, 36–48, 50–52, 54–55, 59–61, 64–68, 70–73, 75–76
services/file_manager/file_download
__init__.py	0	0	100%
download_client.py	0	127	44%	45–46, 48–54, 72–73, 115–120, 122, 125–126, 129–131, 133–135, 137–138, 140–142, 146–154, 157–162, 172–173, 194, 198–199, 205–215, 217–218, 221–222, 227–228, 232–237, 241–242, 245–247, 249–260, 264–267, 270–274, 276–278, 280–282, 284–285, 287, 291–293, 295–308, 310
model.py	0	0	100%
services/file_manager/file_metadata
__init__.py	0	0	100%
file_metadata_client.py	0	3	95%	97–99
services/file_manager/file_move
__init__.py	0	0	100%
file_move_client.py	0	6	91%	71, 80–82, 84, 111
services/file_manager/file_upload
__init__.py	0	0	100%
exception.py	0	1	75%	10
file_upload.py	0	28	84%	36–43, 97–99, 111, 142–143, 147, 152, 189, 209–211, 252–253, 255–257, 331, 334, 338
models.py	0	5	91%	24, 44, 150–152
upload_client.py	0	77	60%	101–104, 207–209, 223–229, 231–235, 237–249, 251, 295, 298, 302, 304–306, 308–311, 315–319, 321, 325, 327, 329, 331, 350, 380–381, 386, 390–393, 397, 413, 415–417, 424, 429–430, 432, 434–435, 437–440, 442
upload_validator.py	0	21	56%	29–31, 34–39, 42–48, 51–52, 57, 59, 61
services/logger_services
__init__.py	0	0	100%
log_functions.py	0	0	100%
services/output_manager
__init__.py	0	0	100%
error_handler.py	0	0	100%
help_page.py	0	0	100%
message_handler.py	0	57	70%	23, 45, 50, 65–67, 72, 82, 87, 100, 105, 112, 117, 122, 126, 142, 177, 187, 196, 214, 224, 243, 265–276, 287–292, 294–300, 311, 315–316, 320–321, 323–324, 328, 332, 336
services/project_manager
__init__.py	0	0	100%
project.py	0	8	78%	38, 44–47, 49–51
services/user_authentication
__init__.py	0	0	100%
decorator.py	0	2	93%	27, 30
token_manager.py	0	9	86%	26, 41–42, 73, 76, 91, 96, 100, 105
user_login_logout.py	0	42	66%	30–31, 41, 122, 126–132, 134–136, 140–141, 145–152, 154–156, 160–161, 168–173, 175–177, 181–184
utils
__init__.py	0	0	100%
aggregated.py	0	22	83%	52, 64, 104, 118–119, 129–130, 132, 156–163, 165–166, 194, 202, 219–220
TOTAL	3124	916	70%