Rc/staging release 20240221

.gitignore

@@ -155,4 +155,5 @@ integration_tests
 # cli manifest data
 ./manifest.json
 manifest.json
+resumable_upload_log.json
 test

README.md

@@ -9,6 +9,24 @@ Command line tool that allows the user to execute data operations on the platfor
 - Python
 - [Click](https://click.palletsprojects.com/en/8.0.x/)
 
+## Getting Started
+
+### Prerequisites
+- Python 3.7+
+- [Poetry](https://python-poetry.org/docs/#installation)
+
+#### Run with Python
+1. Install dependencies (optional: run in edit mode).
+    ```
+       poetry install
+       poetry run python app/pilotcli.py --help
+    ```
+2. Add environment variables if needed.
+
+    1. Create a `.env` file in the root directory of the project.
+    2. Sdd following two environmental varibles to the `.env` file.
+        - `api_url`: the url that the api server is hosted on. default is `https://api.pilot.indocresearch.com/pilot`
+        - `keycloak_realm_url`: thr url that the keycloak server is hosted on. default is `https://iam.pilot.indocresearch.com/realms/pilot`
 
 #### Run from bundled application
 1. Navigate to the appropriate directory for your system.
@@ -17,14 +35,6 @@ Command line tool that allows the user to execute data operations on the platfor
         ./app/bundled_app/mac/
         ./app/bundled_app/mac_arm/
 
-#### Run with Python
-1. Install dependencies (optional: run in edit mode).
-
-       poetry install
-       poetry run pilotcli
-
-2. Add environment variables if needed.
-
 ## Usage
 
     ./app/bundled_app/linux/pilotcli --help

app/__init__.py

@@ -1,3 +1,3 @@
-# Copyright (C) 2022-2023 Indoc Systems
+# Copyright (C) 2022-2024 Indoc Systems
 #
 # Contact Indoc Systems for any questions regarding the use of this source code.

app/commands/__init__.py

@@ -1,3 +1,3 @@
-# Copyright (C) 2022-2023 Indoc Systems
+# Copyright (C) 2022-2024 Indoc Systems
 #
 # Contact Indoc Systems for any questions regarding the use of this source code.

app/commands/container_registry.py

@@ -1,4 +1,4 @@
-# Copyright (C) 2022-2023 Indoc Systems
+# Copyright (C) 2022-2024 Indoc Systems
 #
 # Contact Indoc Systems for any questions regarding the use of this source code.
 

app/commands/dataset.py

@@ -1,4 +1,4 @@
-# Copyright (C) 2022-2023 Indoc Systems
+# Copyright (C) 2022-2024 Indoc Systems
 #
 # Contact Indoc Systems for any questions regarding the use of this source code.
 

app/commands/entry_point.py

@@ -1,4 +1,4 @@
-# Copyright (C) 2022-2023 Indoc Systems
+# Copyright (C) 2022-2024 Indoc Systems
 #
 # Contact Indoc Systems for any questions regarding the use of this source code.
 
@@ -20,6 +20,8 @@
 from .file import file_download
 from .file import file_export_manifest
 from .file import file_list
+from .file import file_metadata_download
+from .file import file_move
 from .file import file_put
 from .file import file_resume
 
@@ -72,6 +74,8 @@ def user_group():
 file_group.add_command(file_list)
 file_group.add_command(file_download)
 file_group.add_command(file_resume)
+file_group.add_command(file_metadata_download)
+file_group.add_command(file_move)
 project_group.add_command(project_list_all)
 user_group.add_command(login)
 user_group.add_command(logout)