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RPathVisio importData() error #35
Description
Hi,
I am working on RPathVisio and I tried to import data in that I came across the error
Please try to fix this error
Cmd:
importData("test", data, "Dr_Derby_Ensembl_91.bridge", host="localhost", port=9000,row.names = TRUE,source="Entrez Gene")
Error in function (type, msg, asError = TRUE) :
Failed to connect to localhost port 9000: Connection refused
Activity
mkutmon commentedon Dec 3, 2019
did you test your connection? is the server started on port 9000?
Preethiba-Gopi commentedon Dec 4, 2019
Hi,
I checked the server starting ports and I changed the port as follows
Cmd:
importData(name="test", dataframe=data, dbname = "Dr_Derby_Ensembl_91.bridge", host="localhost", port=27017, row.names=TRUE, source="Entrez Gene")
Error in function (type, msg, asError = TRUE) : Empty reply from server
But I got error like this. What I need to install in server
mkutmon commentedon Dec 4, 2019
you should find the required documentation here: https://projects.bigcat.unimaas.nl/pathvisiorpc/documentation/launching-the-pathvisiorpc-server/
Let me know if it is not working.
Preethiba-Gopi commentedon Dec 5, 2019
Hi,
Thank you for the documentations and for support. I started PathVisioRPC in 9000 port then I exected the command as follows:
importData(name = "test", dataframe = data, dbname = "Dr_Derby_Ensembl_91", host="localhost", port=9000,row.names = FALSE,source="Entrez Gene")
and I got this error
Error in convertToR(xmlParse(node, asText = TRUE)) :
faultCode: 0 faultString: No method matching arguments: java.lang.String, java.lang.String, java.lang.String
Can u please help me to explain this? Where I am going wrong?
Preethiba-Gopi commentedon Dec 9, 2019
Hi,
Can you please help me in fixing the above mentioned issue?