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1. snakevision snakevision Public

   An awesome tool to visualize snakemake rule graphs

   Python 40 1

2. genome-seek genome-seek Public

   Clinical Whole Genome and Exome Sequencing Pipeline

   Python 31 12

3. RNA-seek RNA-seek Public

   Forked from skchronicles/RNA-seek

   A comprehensive quality-control and quantification RNA-seq pipeline

   Python 9 3

4. cell-seek cell-seek Public

   One single-cell pipeline to rule them all, one pipeline to find them, one pipeline to unify them all, and with the data bind them.

   Python 6 1

5. modr modr Public

   An awesome Oxford Nanopore Pipeline for direct RNA-sequencing

   Python 6 1

6. chrom-seek chrom-seek Public

   An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq

   Python 5 3