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NL-BioImaging AM

NL-BioImaging AM is a distributed research infrastructure aimed at promoting progress in the most cutting edge microscopy technologies and providing open access

18 followers
Netherlands
http://eurobioimaging.nl/
nl-bi@amsterdamumc.nl

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biomero biomero Public

BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster

Python 29 6
OMERO.forms OMERO.forms Public

Extension to OMERO.web to enhance metadata input and provide provenance

Python 9 8
NL-BIOMERO NL-BIOMERO Public

Forked from ome/docker-example-omero-grid

NL‑BIOMERO delivers a full containerized stack to run OMERO together with the BIOMERO 2.0 framework. It provides Docker/Podman configurations and Compose files to deploy OMERO + BIOMERO subsystems …

Shell 13 5
omero-deployment-kit omero-deployment-kit Public

deployment solution for OMERO designed for research institutions that require production-ready OMERO server with minimal hassle

Jinja 7 1
biomero-workflows biomero-workflows Public

Gather workflows that can be used in BIOMERO

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Showing 10 of 27 repositories

imaging-metadata-consolidator Public
Consolidation of image acquisition metadata of different modalities

NL-BioImaging/imaging-metadata-consolidator's past year of commit activity

Python 0 0 0 1 Updated Sep 25, 2026
biomero-converter Public
Convert db image format to Ome-Tiff and Ome-Zarr

NL-BioImaging/biomero-converter's past year of commit activity

Python 1 Apache-2.0 0 0 0 Updated Sep 25, 2026
NL-BIOMERO Public Forked from ome/docker-example-omero-grid
NL‑BIOMERO delivers a full containerized stack to run OMERO together with the BIOMERO 2.0 framework. It provides Docker/Podman configurations and Compose files to deploy OMERO + BIOMERO subsystems (importer, analyzer, OMERO.web plugin, databases, and auxiliary services) — the recommended starting point for a FAIR‑oriented bioimaging setup.

NL-BioImaging/NL-BIOMERO's past year of commit activity

Shell 13 16 0 3 Updated Sep 24, 2026
BIOMERO.importer Public
System that allows automatic importing of datasets via local network

NL-BioImaging/BIOMERO.importer's past year of commit activity

Python 3 GPL-2.0 0 2 1 Updated Sep 24, 2026
biomero-scripts Public
Scripts for use with BIOMERO

NL-BioImaging/biomero-scripts's past year of commit activity

Python 5 GPL-2.0 2 2 4 Updated Sep 24, 2026
BIOMERO.shallower Public
Python library and CPU-only container for shallow OME-Zarr normalization in BIOMERO. Reuses verified canonical pixels while retaining new and changed image and label data, reducing storage and result transfers. Shared by BIOMERO.importer and remote Slurm workflows; no OMERO connection or credentials required.

NL-BioImaging/BIOMERO.shallower's past year of commit activity

Python 0 Apache-2.0 0 0 1 Updated Sep 24, 2026
BIOMERO.ZarrViewer Public
BIOMERO OME-Zarr Viewer Extension

NL-BioImaging/BIOMERO.ZarrViewer's past year of commit activity

JavaScript 0 AGPL-3.0 0 0 0 Updated Sep 24, 2026
OMERO.biomero Public
Plugin adding monitored, in-place uploads and workflows to OMERO Webclient

NL-BioImaging/OMERO.biomero's past year of commit activity

JavaScript 2 AGPL-3.0 1 1 3 Updated Sep 24, 2026
OMERO.DataQueryWorker Public
Hardened bounded-query service for immutable DuckDB, SQLite, and CSV sources

NL-BioImaging/OMERO.DataQueryWorker's past year of commit activity

Python 0 0 0 0 Updated Sep 24, 2026
biomero Public
BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster

NL-BioImaging/biomero's past year of commit activity

Python 29 Apache-2.0 6 3 1 Updated Sep 24, 2026

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