estimate promoter activity from bam file #3

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1. jonathangoeke

   added

   enhancementNew feature or requestNew feature or request

   on Dec 5, 2019
2. jleechung commented on Jun 22, 2020

   

   jleechung

   on Jun 22, 2020

   Collaborator

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   BAM file usage implemented using GenomicAlignments package with readGAlignments and summarizeJunctions functions.
   Future work to be done includes reading/extracting only the reads that are needed to infer junction usage instead of the whole BAM file.
3. ninjaxfy commented on Oct 8, 2021

   

   ninjaxfy

   on Oct 8, 2021

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   Hi:
   I'm trying to estimate promoter activity from bam files, and my question is that I use the given bam file in the proactiv package, but I did not get the result like the workflow.