Add design3 version of GausHitFinder - #24
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📝 WalkthroughWalkthroughThe migration adds design 3 with standalone candidate finding, Gaussian fitting, filtering, and fold stages. It renames design 0 symbols, centralizes ROI data, builds per-design modules, and unifies integration tests for designs 0 through 3. ChangesGaussian hit finder migration
Estimated code review effort: 4 (Complex) | ~45 minutes Merge Risk: 🔵 Low · up to A cleanup failure could allow integration comparisons to validate output from an earlier run and hide a regression. The fix is localized. Sequence Diagram(s)sequenceDiagram
participant Spill
participant unfold_wire_vector_design3
participant unfold_wire_design3
participant cand_hit_standard
participant find_hits_with_gaussians_design3
participant fold_hits_into_vector_design3
Spill->>unfold_wire_vector_design3: unfold spill into wires
unfold_wire_vector_design3->>unfold_wire_design3: unfold wire into wire_roi_data
unfold_wire_design3->>cand_hit_standard: pass wire_roi_data
cand_hit_standard->>find_hits_with_gaussians_design3: pass merge_hit_candidate_vec
find_hits_with_gaussians_design3->>fold_hits_into_vector_design3: return reconstructed hits
fold_hits_into_vector_design3->>Spill: fold hits into spill output
🚥 Pre-merge checks | ✅ 4 | ❌ 1❌ Failed checks (1 warning)
✅ Passed checks (4 passed)
Full details: Docstring CoverageExplanation Docstring coverage is 33.33% which is insufficient. The required threshold is 80.00%. Docstring coverage is scoped to functions touched by this diff. Analyzed 24 functions across 13 files. (4 skipped: 4 unsupported.) ✨ Finishing Touches🧪 Generate unit tests (beta)
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Actionable comments posted: 2
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Inline comments:
In `@migration/gauss_hit_finder/find_hits_with_gaussians_design3.cpp`:
- Around line 28-30: Update the HitCandidate construction in
find_hits_with_gaussians_design3 to use designated initializers with the actual
member names, including startTick, stopTick, maxTick, minTick, maxDerivative,
minDerivative, hitCenter, hitSigma, and hitHeight, instead of positional
initialization.
In `@migration/gauss_hit_finder/run_test.sh`:
- Line 23: Update the cleanup step around rm -f in the test wrapper to check its
exit status and terminate immediately when removal fails, before invoking phlex.
Preserve the existing output-prefix cleanup behavior while ensuring stale files
cannot be used by subsequent comparison tests.
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ℹ️ Review info
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Configuration used: Organization UI
Review profile: ASSERTIVE
Plan: Team
Run ID: 23387112-2dc0-4261-98f8-c7ffd32ccba0
📒 Files selected for processing (18)
migration/gauss_hit_finder/CMakeLists.txtmigration/gauss_hit_finder/README.mdmigration/gauss_hit_finder/cand_hit_standard.cppmigration/gauss_hit_finder/cand_hit_standard.hppmigration/gauss_hit_finder/find_hits_with_gaussians_design0.cppmigration/gauss_hit_finder/find_hits_with_gaussians_design0.hppmigration/gauss_hit_finder/find_hits_with_gaussians_design2.cppmigration/gauss_hit_finder/find_hits_with_gaussians_design2.hppmigration/gauss_hit_finder/find_hits_with_gaussians_design3.cppmigration/gauss_hit_finder/find_hits_with_gaussians_design3.hppmigration/gauss_hit_finder/hit_candidate.hppmigration/gauss_hit_finder/register_find_hits_with_gaussians_design0.cppmigration/gauss_hit_finder/register_find_hits_with_gaussians_design3.cppmigration/gauss_hit_finder/run_design2_test.shmigration/gauss_hit_finder/run_test.shmigration/gauss_hit_finder/test_find_hits_with_gaussians_design0.jsonnetmigration/gauss_hit_finder/test_find_hits_with_gaussians_design3.jsonnetmigration/gauss_hit_finder/wire_roi_data.hpp
💤 Files with no reviewable changes (1)
- migration/gauss_hit_finder/run_design2_test.sh
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📜 Review details
🧰 Additional context used
🧠 Learnings (1)
📚 Learning: 2026-07-08T20:31:37.310Z
Learnt from: wddgit
Repo: Framework-R-D/phlex-examples PR: 18
File: migration/gauss_hit_finder/register_find_hits_with_gaussians_design1.cpp:49-63
Timestamp: 2026-07-08T20:31:37.310Z
Learning: In Framework-R-D/phlex-examples, files under `migration/` that are LArSoft-derived copies should be kept as close as possible to the original LArSoft implementation. During code review, avoid suggesting behavioral changes or extra “hardening” (e.g., new validation, altered logic, different edge-case handling) beyond what is strictly needed to support the phlex migration/demo or to make the code compile/integrate. If a deviation from upstream is required, keep it minimal and document the reason.
Applied to files:
migration/gauss_hit_finder/find_hits_with_gaussians_design2.cpp
🪛 Clang (14.0.6)
migration/gauss_hit_finder/find_hits_with_gaussians_design0.cpp
[warning] 36-36: use a trailing return type for this function
(modernize-use-trailing-return-type)
migration/gauss_hit_finder/find_hits_with_gaussians_design3.cpp
[warning] 23-23: use a trailing return type for this function
(modernize-use-trailing-return-type)
[warning] 27-27: variable name 'c' is too short, expected at least 3 characters
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[warning] 37-37: use a trailing return type for this function
(modernize-use-trailing-return-type)
[warning] 37-37: parameter name 'x' is too short, expected at least 3 characters
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[warning] 39-39: statement should be inside braces
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[warning] 43-43: statement should be inside braces
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[warning] 46-46: statement should be inside braces
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[warning] 67-67: use a trailing return type for this function
(modernize-use-trailing-return-type)
[warning] 72-72: use a trailing return type for this function
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[warning] 75-75: use a trailing return type for this function
(modernize-use-trailing-return-type)
[warning] 75-75: method 'unfold' can be made static
(readability-convert-member-functions-to-static)
[warning] 92-92: use a trailing return type for this function
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[warning] 92-92: method 'initial_value' can be made static
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[warning] 97-97: use a trailing return type for this function
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[warning] 103-103: use a trailing return type for this function
(modernize-use-trailing-return-type)
[warning] 131-131: use a trailing return type for this function
(modernize-use-trailing-return-type)
[warning] 131-131: function 'find_hits_with_gaussians_design3' has cognitive complexity of 102 (threshold 25)
(readability-function-cognitive-complexity)
[note] 146-146: nesting level increased to 1
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[note] 490-490: +1, including nesting penalty of 0, nesting level increased to 1
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[note] 492-492: +1, nesting level increased to 1
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[error] 145-145: no viable conversion from '(lambda at /home/jailuser/git/migration/gauss_hit_finder/find_hits_with_gaussians_design3.cpp:146:7)' to 'std::function<double (double, double, double, double, int, int)>'
(clang-diagnostic-error)
[note] 146-146: candidate function
(clang)
[warning] 147-147: 3 adjacent parameters of 'operator()' of similar type ('double') are easily swapped by mistake
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[note] 147-147: the first parameter in the range is 'peakAmp'
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[note] 149-149: the last parameter in the range is 'areaNorm'
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[error] 151-151: no member named 'numbers' in namespace 'std'
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[note] 162-162: the last parameter in the range is 'hi'
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[warning] 267-267: uninitialized record type: 'peakParams'
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[warning] 270-270: narrowing conversion from 'double' to 'float'
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(bugprone-narrowing-conversions,cppcoreguidelines-narrowing-conversions)
[warning] 354-354: use auto when declaring iterators
(modernize-use-auto)
[warning] 355-355: narrowing conversion from 'float' to '__gnu_cxx::__normal_iterator<const float *, std::vector>::difference_type' (aka 'long')
(bugprone-narrowing-conversions,cppcoreguidelines-narrowing-conversions)
[warning] 362-362: narrowing conversion from 'float' to '__gnu_cxx::__normal_iterator<const float *, std::vector>::difference_type' (aka 'long')
(bugprone-narrowing-conversions,cppcoreguidelines-narrowing-conversions)
[warning] 371-371: narrowing conversion from 'float' to '__gnu_cxx::__normal_iterator<const float *, std::vector>::difference_type' (aka 'long')
(bugprone-narrowing-conversions,cppcoreguidelines-narrowing-conversions)
[warning] 378-378: statement should be inside braces
(readability-braces-around-statements)
[warning] 382-382: statement should be inside braces
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(readability-braces-around-statements)
[warning] 388-388: statement should be inside braces
(readability-braces-around-statements)
[warning] 399-399: narrowing conversion from 'raw::TDCtick_t' (aka 'int') to 'float'
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[warning] 408-408: narrowing conversion from 'int' to signed type 'short' is implementation-defined
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[warning] 409-409: narrowing conversion from 'int' to signed type 'short' is implementation-defined
(bugprone-narrowing-conversions,cppcoreguidelines-narrowing-conversions)
[warning] 410-410: narrowing conversion from 'double' to 'float'
(bugprone-narrowing-conversions,cppcoreguidelines-narrowing-conversions)
[warning] 422-422: statement should be inside braces
(readability-braces-around-statements)
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(readability-braces-around-statements)
[warning] 462-462: use auto when declaring iterators
(modernize-use-auto)
[warning] 470-470: statement should be inside braces
(readability-braces-around-statements)
migration/gauss_hit_finder/register_find_hits_with_gaussians_design3.cpp
[warning] 24-24: use a trailing return type for this function
(modernize-use-trailing-return-type)
[warning] 39-39: use a trailing return type for this function
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[warning] 50-50: use a trailing return type for this function
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[warning] 60-60: use a trailing return type for this function
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[warning] 60-60: all parameters should be named in a function
(readability-named-parameter)
migration/gauss_hit_finder/register_find_hits_with_gaussians_design0.cpp
[warning] 21-21: use a trailing return type for this function
(modernize-use-trailing-return-type)
🪛 Cppcheck (2.21.0)
migration/gauss_hit_finder/cand_hit_standard.cpp
[style] 10-10: The function 'find_and_merge_hit_candidates' is never used.
(unusedFunction)
[style] 35-35: The function 'isValidChannelID' is never used.
(unusedFunction)
migration/gauss_hit_finder/find_hits_with_gaussians_design0.cpp
[style] 36-36: The function 'find_hits_with_gaussians_design0' is never used.
(unusedFunction)
migration/gauss_hit_finder/find_hits_with_gaussians_design3.cpp
[style] 218-218: The function 'StartTick' is never used.
(unusedFunction)
[style] 222-222: The function 'EndTick' is never used.
(unusedFunction)
[style] 230-230: The function 'SigmaPeakTime' is never used.
(unusedFunction)
[style] 242-242: The function 'SigmaPeakAmplitude' is never used.
(unusedFunction)
[style] 246-246: The function 'ROISummedADC' is never used.
(unusedFunction)
[style] 250-250: The function 'HitSummedADC' is never used.
(unusedFunction)
[style] 254-254: The function 'Integral' is never used.
(unusedFunction)
[style] 258-258: The function 'SigmaIntegral' is never used.
(unusedFunction)
[style] 262-262: The function 'Multiplicity' is never used.
(unusedFunction)
[style] 266-266: The function 'LocalIndex' is never used.
(unusedFunction)
[style] 270-270: The function 'GoodnessOfFit' is never used.
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[style] 274-274: The function 'DegreesOfFreedom' is never used.
(unusedFunction)
[style] 282-282: The function 'SignalType' is never used.
(unusedFunction)
[style] 300-300: The function 'PeakTimeMinusRMS' is never used.
(unusedFunction)
[style] 305-305: The function 'TimeDistanceAsRMS' is never used.
(unusedFunction)
[style] 35-35: The function 'isValidChannelID' is never used.
(unusedFunction)
[style] 215-215: The function 'NSignal' is never used.
(unusedFunction)
[style] 124-124: The function 'to_int' is never used.
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[style] 217-217: The function 'markValid' is never used.
(unusedFunction)
[style] 220-220: The function 'markInvalid' is never used.
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[style] 244-244: The function 'getInvalidID' is never used.
(unusedFunction)
[style] 294-294: The function 'asCryostatID' is never used.
(unusedFunction)
[style] 326-326: The function 'next' is never used.
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[style] 409-409: The function 'asTPCID' is never used.
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[style] 466-466: The function 'asPlaneID' is never used.
(unusedFunction)
[style] 471-471: The function 'planeID' is never used.
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[style] 220-220: The function 'set' is never used.
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[style] 67-67: The function 'initial_value' is never used.
(unusedFunction)
[style] 72-72: The function 'predicate' is never used.
(unusedFunction)
[style] 75-75: The function 'unfold' is never used.
(unusedFunction)
[style] 131-131: The function 'find_hits_with_gaussians_design3' is never used.
(unusedFunction)
[style] 501-501: The function 'fold_roi_hits_design3' is never used.
(unusedFunction)
[style] 511-511: The function 'fold_hits_into_vector_design3' is never used.
(unusedFunction)
migration/gauss_hit_finder/register_find_hits_with_gaussians_design3.cpp
[style] 35-35: The function 'isValidChannelID' is never used.
(unusedFunction)
[style] 124-124: The function 'to_int' is never used.
(unusedFunction)
🪛 Shellcheck (0.11.0)
migration/gauss_hit_finder/run_test.sh
[info] 47-47: Double quote to prevent globbing and word splitting.
(SC2086)
🔇 Additional comments (25)
migration/gauss_hit_finder/run_test.sh (1)
1-21: LGTM!Also applies to: 25-51
migration/gauss_hit_finder/README.md (1)
47-94: LGTM!Also applies to: 122-123, 154-180
migration/gauss_hit_finder/CMakeLists.txt (5)
4-8: LGTM!
25-34: LGTM!
99-123: LGTM!
133-133: LGTM!
90-94: 🩺 Stability & AvailabilityNo change needed.
run_test.shremoves only"${output_prefix}_${n}.txt"forn0–4, so parallel tests with distinct prefixes do not delete each other’s outputs.migration/gauss_hit_finder/find_hits_with_gaussians_design0.cpp (1)
17-17: LGTM!Also applies to: 36-36, 455-455
migration/gauss_hit_finder/find_hits_with_gaussians_design0.hpp (1)
1-2: LGTM!Also applies to: 42-42, 58-65
migration/gauss_hit_finder/register_find_hits_with_gaussians_design0.cpp (1)
16-21: LGTM!Also applies to: 82-88
migration/gauss_hit_finder/test_find_hits_with_gaussians_design0.jsonnet (1)
20-20: LGTM!Also applies to: 60-62
migration/gauss_hit_finder/find_hits_with_gaussians_design3.cpp (5)
58-82: LGTM!
188-196: LGTM!
490-494: LGTM!
501-505: LGTM!Also applies to: 511-515
88-90: 🩺 Stability & AvailabilityRemove this lifetime warning.
wire_references the upstreamrecob::Wireproduct managed by Phlex.wire_roi_data::rangeowns its samples becausedatarange_tstores them in astd::vector. No dangling view is created.migration/gauss_hit_finder/test_find_hits_with_gaussians_design3.jsonnet (1)
19-24: LGTM!Also applies to: 26-45, 47-52
migration/gauss_hit_finder/wire_roi_data.hpp (1)
1-29: LGTM!migration/gauss_hit_finder/find_hits_with_gaussians_design2.hpp (1)
43-43: LGTM!migration/gauss_hit_finder/find_hits_with_gaussians_design2.cpp (1)
16-16: LGTM!Also applies to: 91-102, 151-151
migration/gauss_hit_finder/hit_candidate.hpp (1)
1-33: LGTM!migration/gauss_hit_finder/cand_hit_standard.hpp (1)
1-31: LGTM!migration/gauss_hit_finder/cand_hit_standard.cpp (1)
1-120: LGTM!migration/gauss_hit_finder/find_hits_with_gaussians_design3.hpp (1)
1-139: LGTM!migration/gauss_hit_finder/register_find_hits_with_gaussians_design3.cpp (1)
1-131: LGTM!
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phlexversion of theGausHitFinder. This is named design 3. The primary change in this version is that theCandHitStandardclass is now replaced by a transform. In theartversion this was a Tool. The purpose is to demonstrate how a tool can be turned into a phlex algorithm with the hope that in phlex we will not need a separate concept analogous to Tools. We will just turn Tools into phlex algorithms.There are few other changes mixed in here. I made the naming scheme more consistent and that allowed me to simplify the CMakeList.txt file and remove some duplication. This code is easier to understand now. For example, find_hits_with_gaussians.hpp is renamed find_hits_with_gaussians_design0.hpp to be consistent with the analogous files of the other design versions...
In PRs in the near future, we will make the new cand_hit_standard class have a separate registration file and also introduce another transform that does a similar task but with different implementation. This will better demonstrate how the Tool functionality can be replaced using phlex transforms.
There are additions to the unit tests that cover the new code.
Code
phleximplementation ofGausHitFinder.cand_hit_standardinto a separate transform.wire_roi_data.Build system
Tests
run_test.shintegration wrapper.Documentation