Links stay inside the experiment and masks folders; --log is checked before it opens (#81, #99) by guijacquemet · Pull Request #128 · CellMigrationLab/morphobricks-preprocessing

Follow links only inside the experiment and masks folders (#81)

claude

committed

9b20ee2

Check --log before opening it, and open it after the arguments (#99)

claude

committed

229bc7d

Document the link and log rules (#81, #99): contract, user guide, plan Q60-61

claude

committed

b4137fe

List OME-Zarr stores for links without resolving each file (#81)

claude

committed

7e5ce9a

Hold links to the real path of the folder walked, also when it is named through a link (#81)

claude

committed

fbe6829

Review #128: refuse hard links, name broken mask links, harden the --log check

claude

committed

f4381fb

Merge main (#126, #127, #129) into the links and log fix

claude

committed

65e963c

Contract §8: OME-NGFF 0.1/0.2 stores are refused, not fixed by their version (#73)

claude

committed

9b372da

Review #128: refuse a --log that is the design file given with --design (#99)

claude

committed

610aba6

Merge main (#130) into the links and log fix

claude

committed

2aebb97

Review #128 (§9): docstring for the rewritten _Walker.visit; annotate init

claude

committed

795faab

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Links stay inside the experiment and masks folders; --log is checked before it opens (#81, #99) - #128

Links stay inside the experiment and masks folders; --log is checked before it opens (#81, #99)#128
guijacquemet merged 11 commits into
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claude/fix-symlinks-log

Commits on Nov 2, 2026

Follow links only inside the experiment and masks folders (#81)

Check --log before opening it, and open it after the arguments (#99)

Document the link and log rules (#81, #99): contract, user guide, plan Q60-61

List OME-Zarr stores for links without resolving each file (#81)

Hold links to the real path of the folder walked, also when it is named through a link (#81)

Review #128: refuse hard links, name broken mask links, harden the --log check

Merge main (#126, #127, #129) into the links and log fix

Contract §8: OME-NGFF 0.1/0.2 stores are refused, not fixed by their version (#73)

Review #128: refuse a --log that is the design file given with --design (#99)

Merge main (#130) into the links and log fix

Review #128 (§9): docstring for the rewritten _Walker.visit; annotate init