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PP-8c: fixes from running on real data (file modes, absent-axis sizes, masks inputs, stopped-run text, read arguments, design command) - #117

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guijacquemet merged 10 commits into

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claude/pp-8c-real-data-fixes

Nov 2, 2026

Merged

PP-8c: fixes from running on real data (file modes, absent-axis sizes, masks inputs, stopped-run text, read arguments, design command)#117
guijacquemet merged 10 commits into
mainfrom
claude/pp-8c-real-data-fixes

Commits on Nov 2, 2026
- PP-8c: output files get the mode a plain open() gives
  claude
  committed
  36b9f86
- Merge main (PP-8b, roadmap) into PP-8c
  claude
  committed
  c988f09
- PP-8c: no pixel size for an axis the image does not have
  claude
  committed
  d1dd39b
- PP-8c: read_plane and read_mask refuse a z or t that is not a whole number
  claude
  committed
  878e6c6
- PP-8c: a stopped run says what it wrote
  claude
  committed
  be205f2
- PP-8c: move the masks command to cli_masks (mechanical, no behaviour change)
  claude
  committed
  f4a1d9b
- PP-8c: the masks command uses the recorded inputs, like run
  claude
  committed
  47e00de
- PP-8c: check writes the design template; new design command
  claude
  committed
  fad1f75
- PP-8c: design_not_confirmed names the design command
  claude
  committed
  fce9337
- PP-8c review: design and calibrate take --remove-stale-lock
  claude
  committed
  abcf59d