[guijacquemet]

Docs only. This adds docs/roadmap.md (linked from the README) with two checks planned after v0.4.0, as the owner asked on 2026-11-02:

• Q1, outlier FOVs: MorphoEmbed embeds each whole FOV (no patching), and preprocessing flags FOVs far from the others of the same condition and biological repeat.
• Q2, quick mask check: MorphoObjects measures a few cheap shape properties per object, summarised per FOV, and preprocessing flags FOVs with out-of-distribution masks so the user checks the annotation quality.

Rules for both:

• They only flag. Nothing is excluded or corrected automatically.
• They stay fast: a benchmarked time budget per FOV, CPU usable, GPU optional and explicit.
• They are optional extras: check and run never need them.
• They compare FOVs only within their group (same condition and biological repeat), so real differences between conditions are not flagged. A group too small to compare is reported as "not checked".
• They follow the shared science rules: no implicit download, model swap or CPU/GPU fallback, and an unscored FOV is reported, never treated as normal.

Architecture: MorphoEmbed and MorphoObjects depend on preprocessing, so preprocessing cannot import them. Each algorithm stays in its owner brick. Preprocessing owns the outlier statistic, shared with the intensity checks, and the format of the quality-check table. It only displays the flags.

Open for the owner:

• where the step runs: an optional step 5 of the preprocessing notebook, a MorphoFeature "quick QC" preset, or both;
• the default model for Q1;
• the time budget per FOV.

The v0.4.0 spec is unchanged.

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