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Release v0.5.0 - #93
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pyproject 0.5.0; CHANGELOG 'Unreleased' becomes v0.5.0 (2026-11-11) with a 'Migrating to v0.5.0' section for the consuming bricks (preprocessing, CellPatcher, MorphoFeature): schema version 5, channels by ID, centred tail moments, A_SCOPE_INCOMPLETE and the partial_channels opt-in, parameter columns version 2, HV3 removal, v4 hard cut. README release line and install command pinned to @v0.5.0; plan status, S3.2 entry and a v0.5.0 release entry. No code change; dump_outputs (plain and --corpus) identical to main. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01G3qp9AxjpGPw9xfWAUJNqc
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This PR prepares release v0.5.0 (0.4.0 -> 0.5.0). It follows the merge of #90 (Stage 3 S3.2, merge commit 5cfb41c) and copies #89, the v0.4.0 release PR.
The PR changes docs and the version only; there is no code change:
pyproject.toml: version 0.5.0. The package reads its version from the package metadata, so nothing else states or tests it.CHANGELOG.md: the "Unreleased" section becomes "v0.5.0 (2026-11-11)". The [Sad Catapella N2][Scientific correctness] Tail second moments and pooled standard deviation can overflow despite finite true spread #33 paragraph gets a note that schema version 5's centred tail moments (N65) are the format it said was still missing. The new section "Migrating to v0.5.0" covers:PlaneRecord(..., channels=);HistogramTail(count, mean, std);fit/PooledHistogram/Parametersby channel ID;ChannelScopeIncompleteError(A_SCOPE_INCOMPLETE) and thepartial_channelsopt-in, offered only as an explicit user choice; parameter columns version 2;Issue.channelas an ID; the new names.write_plane_histograms(..., channel_ids=<declared [channels] IDs>, failures=...); HV3.failuresand.removed;read_plane_histogram_tableinRunInputs; the version 4 hard cut; drop the N43 refusals.normalization_parameters_version.histogram_fit): map catalogue names torecord.channels.README.md: the latest-release line and the install command are pinned to@v0.5.0, and the status line says schema version 5.docs/plan.md: the status line is v0.5.0, the S3.2 entry is marked merged and released, and a new entry records thev0.5.0release.Dependencies: the package still needs only
numpy>=1.24.Verification:
python tools/check.py, Python 3.13, CSBDeep 0.8.2 installed): exit 0; 1754 passed, 0 skipped.tools/dump_outputs.pyon this branch: SHA-256032b395b…1102(1788 lines).tools/dump_outputs.py --corpus: SHA-2560111f8bd…009e(4764 lines).Nothing is merged or tagged. Tag
v0.5.0after the merge.Generated by Claude Code