Skip to content

Docs: Wave 1 is live in all three hosts #33

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
guijacquemet merged 1 commit into from
Oct 7, 2026
Merged

Docs: Wave 1 is live in all three hosts #33

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions docs/HOST_FEATURES.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9,14 +9,14 @@ Hosts: **Napari** (dock widget), **Fiji** (SciJava dialog, Groovy script or jar)
| `Group` headings, `Advanced` section | yes (checkbox toggles it) | headings in the dialog | heading, folded section |
| `Collapsed` (accordion) | yes (click the heading) | plain heading (SciJava cannot fold) | yes (titled pane) |
| `Widget("slider")` / `Widget("radio")` | `FloatSlider`, `Slider`, radio buttons | slider and radio styles | slider beside the box, radio buttons |
| `Copy as command` (host feature, no manifest change) | planned | planned | planned |
| `Copy as command` (host feature, no manifest change) | button with a menu: terminal line or Python snippet | the Log after each run; menu entry "Copy last run as command" | menu button: terminal line or Python snippet |
| `EnabledWhen` | greys out | ignored: every field stays editable | greys out |
| `PixelSizeOf` | prefilled from the layer | prefilled from the calibration | prefilled from the image |
| `ChoicesFrom` (dropdown) | yes, updates when its inputs change | yes, from the previous run's values; text field the first time | yes, updates when its inputs change |
| `ClearAfterRun` | yes | not needed (a fresh dialog every run) | yes |
| `Replace` | updates the layer or dock in place | closes the previous window, overlay or ROIs | reuses the results window, replaces the annotation |
| `PickChannel` | RGB colours, channels of a TIFF file | a channel number | channel names |
| `RegionOf` (run on the selection) | planned | planned | planned |
| `RegionOf` (run on the selection) | "use the selection" box: the selected Shapes layer (labels 1..N) | "Use the selection" box: ROI Manager selection, else the image ROI (labels 1..N) | "use the selection" box: selected annotations (labels 1..N) |
| `ImageOut`, `LabelsOut` | layer | window | preview and "Open in QuPath" |
| `TableOut` | table dock | Results table | table in the results window |
| `Scalars` | in the status line | in the Log | in the results window and status |
Expand Down
2 changes: 1 addition & 1 deletion docs/MANIFEST.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ A tool declares itself with Python types and a few markers; hosts (Napari, Fiji,
| `Scalars` | return a dict of numbers or text | the values shown to the person |
| `MessageOut` | return a short text | a message block, dialog or label |
| `PointsOut` | return a table with columns `y`, `x` (+ properties) | a points layer, point ROIs, point annotations |
| `ShapesOut` | return `labels_to_shapes(labels)`, a GeoJSON FeatureCollection or a list of polygons | a shapes layer, polygon ROIs, annotations (planned in the hosts; until then it is listed as a file) |
| `ShapesOut` | return `labels_to_shapes(labels)`, a GeoJSON FeatureCollection or a list of polygons | a shapes layer, polygon ROIs, annotations (all three hosts) |
| `FileOut` | return a path | a file the host lists |
| `Affine` (+ `ApplyTo`) | return a 3x3 matrix | an overlay of the moved image |

Expand Down
Loading