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docs: shared policy spec for the wrong-science fix wave #101

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Merged
guijacquemet merged 3 commits into from
Oct 12, 2026
Merged

docs: shared policy spec for the wrong-science fix wave #101

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docs: add SPEC_WRONG_SCIENCE (shared policy for the wrong-science fix…
claude Oct 12, 2026
577bae0
docs: record maintainer decisions in SPEC_WRONG_SCIENCE, amend SPEC_W…
claude Oct 12, 2026
faafc1c
docs: align wrong-science spec with decisions (hosts never prune, per…
claude Oct 12, 2026
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2 changes: 1 addition & 1 deletion docs/AUTHORING.md
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Expand Up @@ -97,7 +97,7 @@ read with `tifffile`; other formats (PNG, JPEG, ...) are read if the app environ
```
labconstrictor-tools check --module my_app_lc_tools --pythonpath .
labconstrictor-tools register --name myapp --prefix <app prefix> --module my_app_lc_tools --pythonpath . # by hand; the installer does it
labconstrictor-tools run myapp blur image=cells.tif sigma=3 --out results/ # without --out: <LC_HOME>/results/<time>_<app>_<tool> (newest 20 kept)
labconstrictor-tools run myapp blur image=cells.tif sigma=3 --out results/ # without --out: <LC_HOME>/results/<time>_<app>_<tool> (newest 20 completed kept by `labconstrictor-tools prune`)
labconstrictor-tools run myapp blur --usage
```

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2 changes: 1 addition & 1 deletion docs/HOST_FEATURES.md
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Expand Up @@ -11,7 +11,7 @@ Hosts: **Napari** (dock widget), **Fiji** (SciJava dialog, Groovy script or jar)
| `Widget("slider")` / `Widget("radio")` | `FloatSlider`, `Slider`, radio buttons | slider and radio styles | slider beside the box, radio buttons |
| `Copy as command` (host feature, no manifest change) | button with a menu: terminal line or Python snippet | the Log after each run; menu entry "Copy last run as command" | menu button: terminal line or Python snippet |
| `EnabledWhen` | greys out | ignored: every field stays editable | greys out |
| `PixelSizeOf` | prefilled from the layer | prefilled from the calibration | prefilled from the image |
| `PixelSizeOf` | prefilled from the layer's scale and length unit; a bare scale with pixel units is *not calibrated* (blank, run blocked) | prefilled from the calibration; uncalibrated: blank, run blocked | prefilled from the image; uncalibrated: blank, run blocked |
| `ChoicesFrom` (dropdown) | yes, updates when its inputs change | yes, from the previous run's values; text field the first time | yes, updates when its inputs change |
| `ClearAfterRun` | yes | not needed (a fresh dialog every run) | yes |
| `Replace` | updates the layer or dock in place | closes the previous window, overlay or ROIs | reuses the results window, replaces the annotation |
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