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guijacquemet merged 1 commit into from
Oct 14, 2026
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docs: app_hosts_v1 rule is honoured (present tense) #36

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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -12,7 +12,7 @@ so QuPath never imports the app's packages and needs no Python of its own. Same

For scripters, a second way that needs no jar: download the **single file** `LabConstrictorTools-all.groovy` from the same release (the whole script in one file), open it in QuPath's Script Editor and run it. This all-in-one file is what the Script Editor needs: the script in the repository is split into the part files listed in `parts.txt`, and those do not run on their own in the Script Editor (the jar joins them itself).

Install page for the apps and all three hosts: [Tools `docs/INSTALL.md`](https://github.com/CellMigrationLab/LabConstrictor-Tools/blob/main/docs/INSTALL.md). Apps declare which hosts list them (`hosts:` in their `labconstrictor-app.yaml`); the rule is a binding rule in Tools 0.3.0a1 (feature `app_hosts_v1`; PROTOCOL.md section App hosts); Napari honours it (PR #61 merged); Fiji and QuPath honour it once their PRs (#47, #35) merge; installers pass the hosts from template 0.1.18 (template PR #33, not merged). Intended for QuPath: Playground, NucleiSky and Guess the Condition. **VLab4Mic is not listed in QuPath** (it is for Napari and Fiji), and CellTracksColab is not listed in any host. Testing: the [human test protocol](https://github.com/CellMigrationLab/LabConstrictor-Tools/blob/main/docs/HUMAN_TEST_PROTOCOL.md) and its [record sheet](https://github.com/CellMigrationLab/LabConstrictor-Tools/blob/main/docs/HUMAN_TEST_PROTOCOL.md#0-record-sheet-the-test-set-fill-in-before-you-start).
Install page for the apps and all three hosts: [Tools `docs/INSTALL.md`](https://github.com/CellMigrationLab/LabConstrictor-Tools/blob/main/docs/INSTALL.md). Apps declare which hosts list them (`hosts:` in their `labconstrictor-app.yaml`); the rule is a binding rule in Tools 0.3.0a1 (feature `app_hosts_v1`; PROTOCOL.md section App hosts); Napari, Fiji and QuPath all honour it (this host since PR #35). Apps without a declaration, i.e. installed with an installer from before template 0.1.18, are listed in every host and the Log says so ("declares no hosts"); installers pass the hosts from template 0.1.18 (template PR #33, not merged yet). Intended for QuPath: Playground, NucleiSky and Guess the Condition. **VLab4Mic is not listed in QuPath** (it is for Napari and Fiji), and CellTracksColab is not listed in any host. Testing: the [human test protocol](https://github.com/CellMigrationLab/LabConstrictor-Tools/blob/main/docs/HUMAN_TEST_PROTOCOL.md) and its [record sheet](https://github.com/CellMigrationLab/LabConstrictor-Tools/blob/main/docs/HUMAN_TEST_PROTOCOL.md#0-record-sheet-the-test-set-fill-in-before-you-start).

Every release lists the QuPath version it was built against and the minimum Tools version in its notes; `SHA256SUMS` holds the checksums of the files.

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2 changes: 1 addition & 1 deletion docs/user-guide.md
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Expand Up @@ -10,7 +10,7 @@ The extension runs the tools of every installed LabConstrictor app from QuPath,
## What you need

- [QuPath](https://qupath.github.io) 0.7.
- At least one LabConstrictor app installed on your computer. The app's installer registers it, which is how the extension finds it. Apps declare which hosts list them (`hosts:` in their `labconstrictor-app.yaml`); the rule is a binding rule in Tools 0.3.0a1 (feature `app_hosts_v1`; PROTOCOL.md section App hosts); Napari honours it (PR #61 merged); Fiji and QuPath honour it once their PRs (#47, #35) merge; installers pass the hosts from template 0.1.18 (template PR #33, not merged). Intended for QuPath: Playground, NucleiSky and Guess the Condition. **VLab4Mic is not listed in QuPath** (it is for Napari and Fiji), and CellTracksColab is not listed in any host.
- At least one LabConstrictor app installed on your computer. The app's installer registers it, which is how the extension finds it. Apps declare which hosts list them (`hosts:` in their `labconstrictor-app.yaml`); the rule is a binding rule in Tools 0.3.0a1 (feature `app_hosts_v1`; PROTOCOL.md section App hosts); Napari, Fiji and QuPath all honour it (this host since PR #35). Apps without a declaration, i.e. installed with an installer from before template 0.1.18, are listed in every host and the Log says so ("declares no hosts"); installers pass the hosts from template 0.1.18 (template PR #33, not merged yet). Intended for QuPath: Playground, NucleiSky and Guess the Condition. **VLab4Mic is not listed in QuPath** (it is for Napari and Fiji), and CellTracksColab is not listed in any host.
- Only to build the jar yourself: JDK 25 (QuPath 0.7 is built with Java 25), as described in the repository's README.

## Install
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