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BenSiv/README.md

Hi, I'm Ben Sivan πŸ‘‹

Data Scientist | Bioinformatician | AgTech & FoodTech Specialist

I bridge the gap between biology, computation, and knowledge management. My work focuses on building infrastructure for scientific research, automating complex biological workflows, and designing simple tools β€” self-organizing knowledge bases, AI agents, high-performance CAD β€” that make complex problems tractable.


πŸš€ What I'm Building

Project Highlights

  • Luam: A modernized, minimal Lua dialect designed for cleaner syntax, less boilerplate, and native standalone compilation.
  • Daat: A self-maintaining knowledge base with an integrated AI agent, built in Luam. Documents, chats, and the agent's own reasoning flow into one shared pool that organizes itself through usage β€” via maturity tiers, a fixed "heat" budget that surfaces what matters, and full audit trails, with nothing ever deleted.
  • Luametry: A professional, programmatic CAD tool for Lua supporting STEP, 3MF, and OBJ exports, integrated with the high-performance Manifold geometry library and featuring high-fidelity terminal previews.
  • Brain-ex: A terminal-first "second brain" for rapid markdown note capture, task management, and semantic indexing, featuring optional Obsidian integration.
  • Filament: A hybrid RAG system for cold case investigation, linking structured forensic data with unstructured narrative text using localized LLM reasoning.

πŸ› οΈ Tech Stack & Expertise

Area Tools & Tech
Data Science & ML Python (Scikit-learn, PyTorch), R, Julia, SQL, NLP, RAG, LLM Agents, Reinforcement Learning
Bioinformatics & Biotech Sequence Processing, Genome Assembly, CRISPR/Cas9, Cell Culture Monitoring, CVS Biomass Amplification
Knowledge Systems Luam, Vertex AI, Semantic Search, Markdown Knowledge Graphs, Audit-Trailed Data Stores
CAD & Tooling Luametry, OpenSCAD, Manifold, Git, FDM 3D Printing

πŸŽ“ Background

  • M.Sc. in Biotechnology from Tel-Hai College (Focus on CRISPR/Cas9 gene editing in trees)
  • Data Science Program Graduate at Israel Tech Challenge
  • Currently a Data Scientist at Celleste-Bio, architecting scientific knowledge infrastructure.

πŸ“« Connect with me


"Automating the redundant so we can focus on the breakthrough."

Pinned Loading

  1. luam luam Public

    Minimal and Modernized Lua dialect.

    C 2

  2. luametry luametry Public

    Lua-based parametric CAD tool.

    Lua 3

  3. brain-ex brain-ex Public

    A terminal-first second brain for rapid note capture, task tracking, and Obsidian integration.

    Lua 1

  4. filament filament Public

    Python

  5. auraradar auraradar Public

    Rust 3

  6. daat daat Public

    Lua