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@AbeelLab

AbeelLab

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  1. genometools genometools Public

    GenomeTools is a collection of algorithms to manipulate genomics related file format. The primary purpose is to convert file formats from one to another.

    Java 5 1

  2. atk atk Public

    Abeel Toolkit is set of utility classes that are used in our other projects.

    Java 1 1

  3. javaml javaml Public

    Java Machine Learning Library

    Java 64 20

  4. nanopore-cenpk113-7d nanopore-cenpk113-7d Public

    Supplementary data for our CENPK113-7D assembly paper

  5. hat hat Public

    Haplotype Assembly Tool

    Python 8 2

  6. quanttb quanttb Public

    QuantTB is a SNP based method to identify and quantify individual strains present in tuberculosis whole genome sequencing datasets.

    Python 7 5

Repositories

Showing 10 of 56 repositories
  • VB2_network_analysis Public

    Comparative analysis of microbial association networks in response to Vitamin B2 (VB2) supplementation.

    AbeelLab/VB2_network_analysis's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Aug 6, 2026
  • jaxkineticmodel Public

    Building, simulating, and training systems biology models using JAX/Diffrax

    AbeelLab/jaxkineticmodel's past year of commit activity
    Jupyter Notebook 13 Apache-2.0 1 0 0 Updated Jun 24, 2026
  • atk Public

    Abeel Toolkit is set of utility classes that are used in our other projects.

    AbeelLab/atk's past year of commit activity
    Java 1 1 0 0 Updated Feb 23, 2026
  • AbeelLab/Comparative-Microbial-Network-Analysis's past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 13, 2026
  • AbeelLab/ml-assisted-p-coumaric-acid-optimization's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 10, 2026
  • BenchmarkProjectDSMF Public

    Comparing recommendation strategies for simulated DBTL cycles

    AbeelLab/BenchmarkProjectDSMF's past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Feb 3, 2026
  • drought-microbiome-analysis Public

    A collection of processed datasets and a QIIME2-based pipeline to analyze microbiome data from plant roots and soil

    AbeelLab/drought-microbiome-analysis's past year of commit activity
    Python 0 0 0 0 Updated Jan 27, 2026
  • tudelft-report-thesis-template Public template Forked from dzwaneveld/tudelft-report-thesis-template

    A LaTeX report/thesis template that aims to simplify and improve the (Xe)LaTeX template provided by the TU Delft. Ready-to-go with its rewritten class file and redesigned cover page.

    AbeelLab/tudelft-report-thesis-template's past year of commit activity
    TeX 0 22 0 0 Updated Oct 7, 2025
  • AbeelLab/simulated-dbtl's past year of commit activity
    Jupyter Notebook 3 MIT 1 0 0 Updated Mar 14, 2025
  • safpred Public

    Synteny-aware gene function prediction for bacteria using protein embeddings

    AbeelLab/safpred's past year of commit activity
    Python 5 2 1 0 Updated Jan 8, 2025

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