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@opencobra

openCOBRA

Community driven constraint-based reconstruction, analysis and modelling of biology

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  1. cobrapy cobrapy Public

    COBRApy is a package for constraint-based modeling of metabolic networks.

    Python 586 238

  2. cobratoolbox cobratoolbox Public

    The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

    MATLAB 288 337

  3. COBRA.jl COBRA.jl Public

    High-level, high-performance, constraint-based reconstruction and analysis in Julia

    Julia 63 32

  4. MASS-Toolbox MASS-Toolbox Public

    Mass Action Stoichiometric Simulation (MASS) Toolbox

    Mathematica 13 8

  5. MATLAB.devTools MATLAB.devTools Public

    MATLAB Development Tools

    MATLAB 28 35

  6. memote memote Public

    memote – the genome-scale metabolic model test suite

    HTML 151 32

Repositories

Showing 10 of 36 repositories
  • swiglpk Public

    Simple swig bindings for the GNU Linear Programming Kit

    opencobra/swiglpk's past year of commit activity
    Python 30 GPL-3.0 11 2 3 Updated Sep 4, 2026
  • Medusa Public

    Analysis of ensembles of metabolic network reconstructions

    opencobra/Medusa's past year of commit activity
    Python 22 MIT 9 28 22 Updated Sep 3, 2026
  • cobrapy Public

    COBRApy is a package for constraint-based modeling of metabolic networks.

    opencobra/cobrapy's past year of commit activity
    Python 586 GPL-2.0 238 77 (4 issues need help) 21 Updated Aug 29, 2026
  • cobratoolbox Public

    The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

    opencobra/cobratoolbox's past year of commit activity
    MATLAB 288 337 65 (1 issue needs help) 2 Updated Aug 24, 2026
  • COBRA.tutorials Public

    Repository of tutorials for The COBRA Toolbox

    opencobra/COBRA.tutorials's past year of commit activity
    MATLAB 25 61 3 0 Updated Aug 24, 2026
  • COBRA.models Public

    Set of models used for testing COBRA code in continuous integration environments

    opencobra/COBRA.models's past year of commit activity
    Julia 0 4 0 0 Updated Aug 21, 2026
  • COBRA.papers Public

    Repository for scripts related to reproducing the results of an individual publication

    opencobra/COBRA.papers's past year of commit activity
    MATLAB 10 16 1 0 Updated Aug 11, 2026
  • cobrapy-website Public
    opencobra/cobrapy-website's past year of commit activity
    HTML 1 LGPL-3.0 7 0 1 Updated Aug 11, 2026
  • reconstructor Public

    Open source tool for biochemical network reconstruction

    opencobra/reconstructor's past year of commit activity
    Java 3 GPL-3.0 2 1 0 Updated Jun 16, 2026
  • escher Public
    opencobra/escher's past year of commit activity
    JavaScript 6 3 2 0 Updated Jun 5, 2026
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