Issues

• Feature request: WDL 1.3 Support

  dnanexus/dxCompiler#529 · Filter by author Ben-Habermeyer opened on Jan 15, 2026

• How to use asset bundles in a WDL workflow?

  dnanexus/dxCompiler#525 · Filter by author e-dorigatti opened on Sep 18, 2025
  1

• dxCompiler fails to compile example scripts like bam_chrom_counter

  dnanexus/dxCompiler#524 · Filter by author tprodanov opened on Sep 15, 2025
  2

• CWL workflow expressionLib functions are overwritten by tool expressionLib when evaluating step valueFrom expressions

  dnanexus/dxCompiler#521 · Filter by author ThomasHickman opened on Jul 18, 2025

• An object to be cloned is not in the closed state.

  dnanexus/dxCompiler#517 · Filter by author markwoon opened on Jun 14, 2025
  1

• dxCompiler -projectWideReuse flag does not pick up changes to Structs, causing RuntimeError

  dnanexus/dxCompiler#503 · Filter by author Ben-Habermeyer opened on May 12, 2025

• Add option to specify root folder when searching for existing applets

  dnanexus/dxCompiler#493 · Filter by author jdidion opened on Feb 24, 2025

• dxCompiler doesn't seem to work with recent versions of java

  dnanexus/dxCompiler#468 · Filter by author LiterallyUniqueLogin opened on Aug 6, 2024

• Failed to generate Array[File] with optional input

  dnanexus/dxCompiler#466 · Filter by author nttg8100 opened on Jul 16, 2024

• java.lang.IllegalArgumentException: Invalid HTTP host: 127.0.0.1:7890/

  dnanexus/dxCompiler#459 · Filter by author HackerLZH opened on Feb 19, 2024
  1

• CWL workflow complied to include a subworkflow with an outputs applet fails to run successfully

  dnanexus/dxCompiler#455 · Filter by author ThomasHickman opened on Sep 6, 2023
  1

• wdl 1.1 sep() vs command block ~{sep} return different values

  tracked_internally
  dnanexus/dxCompiler#435 · Filter by author Ben-Habermeyer opened on Apr 10, 2023
  2

• dxCompiler possibly incorrect localizes input file expressions

  tracked_internally
  dnanexus/dxCompiler#417 · Filter by author LiterallyUniqueLogin opened on Jan 31, 2023
  12

• Preserve folder hierarchies on the platform

  dnanexus/dxCompiler#415 · Filter by author RachelDuffin opened on Jan 9, 2023
  10

• Apollo - Spark and cohort files

  dnanexus/dxCompiler#402 · Filter by author ANickerson opened on Oct 21, 2022

• Downloading lots of small files

  dnanexus/dxCompiler#399 · Filter by author barneyhill opened on Oct 19, 2022

• Array[String?] compiles incorrectly to "(hash" and "(array:file)"

  dnanexus/dxCompiler#389 · Filter by author msnyder424 opened on Sep 23, 2022

• dxcompiler can not process Pair object

  tracked_internally
  dnanexus/dxCompiler#386 · Filter by author madetunj opened on Sep 8, 2022
  2

  

• Runtime error with default string = ""

  dnanexus/dxCompiler#364 · Filter by author Ben-Habermeyer opened on Jul 28, 2022

• java.lang.AssertionError: assertion failed: only the last part may end with '_', and only if the suffix does not start with '_'

  tracked_internally
  dnanexus/dxCompiler#282 · Filter by author adthrasher opened on Jan 11, 2022
  3

• What does this mean?

  tracked_internally
  dnanexus/dxCompiler#149 · Filter by author BJWiley233 opened on Jul 7, 2021
  8