From 9e60778a710fc1e45868169e35c39334d0d30999 Mon Sep 17 00:00:00 2001 From: guijacquemet Date: Tue, 13 Oct 2026 19:01:10 +0300 Subject: [PATCH 1/3] Remove a committed JVM crash log Co-Authored-By: Claude Sonnet 5.5 Claude-Session: https://claude.ai/code/session_01Y2SN8SuEakTdiWy3F2WUqN --- hs_err_pid19689.log | 50 --------------------------------------------- 1 file changed, 50 deletions(-) delete mode 100644 hs_err_pid19689.log diff --git a/hs_err_pid19689.log b/hs_err_pid19689.log deleted file mode 100644 index 6098b52..0000000 --- a/hs_err_pid19689.log +++ /dev/null @@ -1,50 +0,0 @@ -# -# A fatal error has been detected by the Java Runtime Environment: -# -# SIGSEGV (0xb) at pc=0x00007f29dc44798b, pid=19689, tid=19814 -# -# JRE version: OpenJDK Runtime Environment Temurin-25.0.2+10 (25.0.2+10) (build 25.0.2+10-LTS) -# Java VM: OpenJDK 64-Bit Server VM Temurin-25.0.2+10 (25.0.2+10-LTS, mixed mode, tiered, compressed oops, compressed class ptrs, g1 gc, linux-amd64) -# Problematic frame: -# C [libc.so.6+0x4798b] -# -# No core dump will be written. Core dumps have been disabled. To enable core dumping, try "ulimit -c unlimited" before starting Java again -# -# If you would like to submit a bug report, please visit: -# https://github.com/adoptium/adoptium-support/issues -# The crash happened outside the Java Virtual Machine in native code. -# See problematic frame for where to report the bug. -# - ---------------- S U M M A R Y ------------ - -Command Line: -Djavax.net.ssl.trustStore=/etc/ssl/certs/java/cacerts -Djavax.net.ssl.trustStoreType=JKS -Dhttps.proxyHost=127.0.0.1 -Dhttps.proxyPort=45401 -Dhttp.nonProxyHosts=localhost|127.0.0.1|::1|127.*|0.*|::|169.254.*|api.anthropic.com|api-staging.anthropic.com|api-pr-preview.anthropic.com|mcp-proxy.anthropic.com|mcp-proxy-staging.anthropic.com|registry.npmjs.org|jsr.io|npm.jsr.io|pypi.org|files.pythonhosted.org|index.crates.io|proxy.golang.org|host.docker.internal|10.*|172.16.*|172.17.*|172.18.*|172.19.*|172.20.*|172.21.*|172.22.*|172.23.*|172.24.*|172.25.*|172.26.*|172.27.*|172.28.*|172.29.*|172.30.*|172.31.*|192.168.*|100.64.0.0/10|*.svc.cluster.local|*.svc.cluster.local -Djdk.http.auth.tunneling.disabledSchemes= -Djdk.http.auth.proxying.disabledSchemes= -Djpackage.app-version=0.7.0 -XX:MaxRAMPercentage=50 --add-opens=javafx.graphics/com.sun.javafx.css=ALL-UNNAMED --enable-native-access=javafx.graphics,javafx.media,javafx.web --enable-native-access=ALL-UNNAMED --add-opens=javafx.base/com.sun.javafx.event=ALL-UNNAMED -Djpackage.app-path=/home/tester/qupath/QuPath/bin/QuPath qupath.QuPath -q -Dlc.noshow=true -Dlc.qupath.test.script=/tmp/lc_gui_test_19646.groovy -Dlc.test.out=/tmp/qp_shots - -Host: Intel(R) Xeon(R) Processor @ 2.80GHz, 4 cores, 13G, Ubuntu 24.04.4 LTS -Time: Mon Oct 12 14:23:06 2026 UTC elapsed time: 898.596299 seconds (0d 0h 14m 58s) - ---------------- T H R E A D --------------- - -Current thread (0x00007f2968279130): JavaThread "JavaFX Application Thread" [_thread_in_native, id=19814, stack(0x00007f29400d9000,0x00007f29401d9000) (1024K)] - -Stack: [0x00007f29400d9000,0x00007f29401d9000], sp=0x00007f29401d7580, free space=1017k -Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code) -C [libc.so.6+0x4798b] -C [libc.so.6+0x47bbe] -C [libX11.so.6+0x3db62] -C [libX11.so.6+0x40915] _XIOError+0x75 -C [libX11.so.6+0x44a7d] _XEventsQueued+0x8d -C [libX11.so.6+0x37951] XPending+0x61 -C [libgdk-3.so.0+0x8facf] -C [libglib-2.0.so.0+0x5e207] -C [libglib-2.0.so.0+0xbc887] -C [libglib-2.0.so.0+0x5df47] g_main_loop_run+0x127 -C [libgtk-3.so.0+0x1febc5] gtk_main+0x85 -C [libglassgtk3.so+0x995d2] Java_com_sun_glass_ui_gtk_GtkApplication__1runLoop+0x52 -j com.sun.glass.ui.gtk.GtkApplication._runLoop(Ljava/lang/Runnable;Z)V+0 -j com.sun.glass.ui.gtk.GtkApplication.lambda$runLoop$0(Ljava/lang/Runnable;Z)V+7 -j com.sun.glass.ui.gtk.GtkApplication$$Lambda+0x0000000008253758.run()V+12 -j java.lang.Thread.runWith(Ljava/lang/Object;Ljava/lang/Runnable;)V+5 java.base@25.0.2 -j java.lang.Thread.run()V+19 java.base@25.0.2 -v ~StubRoutines::call_stub 0x00007f29cc537fa6 -V [libjvm.so+0xa21a20] \ No newline at end of file From 7ba65e2b35d85db0cef7701dd4e4ae128e7e5750 Mon Sep 17 00:00:00 2001 From: guijacquemet Date: Tue, 13 Oct 2026 19:01:20 +0300 Subject: [PATCH 2/3] Remove a committed JVM crash log Co-Authored-By: Claude Sonnet 5.5 Claude-Session: https://claude.ai/code/session_01Y2SN8SuEakTdiWy3F2WUqN --- hs_err_pid4398.log | 48 ---------------------------------------------- 1 file changed, 48 deletions(-) delete mode 100644 hs_err_pid4398.log diff --git a/hs_err_pid4398.log b/hs_err_pid4398.log deleted file mode 100644 index cffeb92..0000000 --- a/hs_err_pid4398.log +++ /dev/null @@ -1,48 +0,0 @@ -# -# A fatal error has been detected by the Java Runtime Environment: -# -# SIGSEGV (0xb) at pc=0x00007f296724798b, pid=4398, tid=4504 -# -# JRE version: OpenJDK Runtime Environment Temurin-25.0.2+10 (25.0.2+10) (build 25.0.2+10-LTS) -# Java VM: OpenJDK 64-Bit Server VM Temurin-25.0.2+10 (25.0.2+10-LTS, mixed mode, tiered, compressed oops, compressed class ptrs, g1 gc, linux-amd64) -# Problematic frame: -# C [libc.so.6+0x4798b] -# -# No core dump will be written. Core dumps have been disabled. To enable core dumping, try "ulimit -c unlimited" before starting Java again -# -# If you would like to submit a bug report, please visit: -# https://github.com/adoptium/adoptium-support/issues -# The crash happened outside the Java Virtual Machine in native code. -# See problematic frame for where to report the bug. -# - ---------------- S U M M A R Y ------------ - -Command Line: -Djavax.net.ssl.trustStore=/etc/ssl/certs/java/cacerts -Djavax.net.ssl.trustStoreType=JKS -Dhttps.proxyHost=127.0.0.1 -Dhttps.proxyPort=45401 -Dhttp.nonProxyHosts=localhost|127.0.0.1|::1|127.*|0.*|::|169.254.*|api.anthropic.com|api-staging.anthropic.com|api-pr-preview.anthropic.com|mcp-proxy.anthropic.com|mcp-proxy-staging.anthropic.com|registry.npmjs.org|jsr.io|npm.jsr.io|pypi.org|files.pythonhosted.org|index.crates.io|proxy.golang.org|host.docker.internal|10.*|172.16.*|172.17.*|172.18.*|172.19.*|172.20.*|172.21.*|172.22.*|172.23.*|172.24.*|172.25.*|172.26.*|172.27.*|172.28.*|172.29.*|172.30.*|172.31.*|192.168.*|100.64.0.0/10|*.svc.cluster.local|*.svc.cluster.local -Djdk.http.auth.tunneling.disabledSchemes= -Djdk.http.auth.proxying.disabledSchemes= -Djpackage.app-version=0.7.0 -XX:MaxRAMPercentage=50 --add-opens=javafx.graphics/com.sun.javafx.css=ALL-UNNAMED --enable-native-access=javafx.graphics,javafx.media,javafx.web --enable-native-access=ALL-UNNAMED --add-opens=javafx.base/com.sun.javafx.event=ALL-UNNAMED -Djpackage.app-path=/home/tester/qupath/QuPath/bin/QuPath qupath.QuPath -q -Dlc.noshow=true -Dlc.test.fixtures=/tmp/wt_parity_qupath/tests/fixtures -Dlc.qupath.test.script=/tmp/lc_gui_test_4381.groovy -Dlc.test.out=/tmp/qp_shots - -Host: Intel(R) Xeon(R) Processor @ 2.80GHz, 4 cores, 13G, Ubuntu 24.04.4 LTS -Time: Mon Oct 12 16:29:55 2026 UTC elapsed time: 899.747521 seconds (0d 0h 14m 59s) - ---------------- T H R E A D --------------- - -Current thread (0x00007f28c93e9860): JavaThread "AWT-XAWT" daemon [_thread_in_native, id=4504, stack(0x00007f2866eff000,0x00007f2866fff000) (1024K)] - -Stack: [0x00007f2866eff000,0x00007f2866fff000], sp=0x00007f2866ffd700, free space=1017k -Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code) -C [libc.so.6+0x4798b] -C [libc.so.6+0x47bbe] -C [libX11.so.6+0x3db62] -C [libX11.so.6+0x40915] _XIOError+0x75 -C [libX11.so.6+0x44a7d] _XEventsQueued+0x8d -C [libX11.so.6+0x378c8] XEventsQueued+0x68 -J 10277 sun.awt.X11.XlibWrapper.XEventsQueued(JI)I java.desktop@25.0.2 (0 bytes) @ 0x00007f29572bd405 [0x00007f29572bd380+0x0000000000000085] -j sun.awt.X11.XToolkit.run(Z)V+63 java.desktop@25.0.2 -j sun.awt.X11.XToolkit.run()V+5 java.desktop@25.0.2 -j java.lang.Thread.runWith(Ljava/lang/Object;Ljava/lang/Runnable;)V+5 java.base@25.0.2 -j java.lang.Thread.run()V+19 java.base@25.0.2 -v ~StubRoutines::call_stub 0x00007f2956937fa6 -V [libjvm.so+0xa21a20] JavaCalls::call_helper(JavaValue*, methodHandle const&, JavaCallArguments*, JavaThread*)+0x2b0 -V [libjvm.so+0xa2335f] JavaCalls::call_virtual(JavaValue*, Handle, Klass*, Symbol*, Symbol*, JavaThread*)+0x1df -V [libjvm.so+0xb13ccc] thread_entry(JavaThread*, JavaThread*)+0x8c -V [libjvm.so+0xa3c0de] JavaThread::thread_main_inner()+0x1de -V [libjvm.so+0x116b2ef] Thread::call_run()+0x9f \ No newline at end of file From 277d9d9671a84bbf8e8b240773fb8d62c2706ea8 Mon Sep 17 00:00:00 2001 From: guijacquemet Date: Tue, 13 Oct 2026 19:01:22 +0300 Subject: [PATCH 3/3] Ignore JVM crash logs Co-Authored-By: Claude Sonnet 5.5 Claude-Session: https://claude.ai/code/session_01Y2SN8SuEakTdiWy3F2WUqN --- .gitignore | 1 + 1 file changed, 1 insertion(+) diff --git a/.gitignore b/.gitignore index d7c9325..2cf2e37 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,4 @@ target/ __pycache__/ *.class +hs_err_pid*.log